Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00923 ATGGTGGAAGGAAGAGTTCGTTTATCTGAGGAAGCTAGAAATGGGTTAGAAATTTTGAAGCGTAAAAGGCTTCAGCGTGCAAAATCCGTCACTGCCACTCAGACTAGTGTTGCAAACATGATAAACAGAAGCGGAGGAGATGCTTTGAGAGGTTCAGCTTCATGTGGCCCGAGATTGCATGGTAATGCAGATATCTTTTTCAAGCGGAAGGTGGATAAGTTTGATACTAGTGATCTGGAATGGACAGAGAAAATTCCAGAGTGTCCTGTGTATTCTCCTACGAAGGAGGAATTTGAAGATCCTTTGATTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGCATATGCAAGATTATTTCTCCGCTGAGTGCTTCTGTACCTGCTGGGGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACTACTAGAGTGCAGCCCCTTCGCCTTGCTGAATGGGATACTGAAGATAAAGTAACATTTTTTATGAGTGGAAGAAGTTATACATTCCGTGATTTTGAGAAAATGGCAAACAAGGTCTTTGCACGAAGATATTGCAGCGCAGGATGTCTTCCTGCGACTTACTTGGAAAAGGAGTTTTGGCATGAAGTTGGTTGTGGGAAAATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCTACTGATCAGCTTGGGAACAGCAACTGGAATTTACAGAAGCTTTCTTGGTTGCCCAAATCAACTTTGCGGCTCTTGGAAACTTCAATTCCGGGAGTGACAGAACCCATGCTATATATTGGAATGCTGTTTAGTATGTTTGCATGGCACGTGGAGGATCATTATTTGTACAGCATTAATTATCAGCACTGTGGGGCGTCAAAAACATGGTATGGTATCCCTGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTATACTACTGATATTTTGTCAAATGACGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGCAAAACAACTCTATTTCCACCTAATATTTTGTTGGAGCATAAAGTCCCTGTCTACAAGGCTGTTCAAAAGCCCGGGGAGTTTGTAATAACATTCCCTAGAGCGTATCATGCAGGCTTCAGTCATGGTTTCAATTGCGGAGAAGCAGTGAATTTTGCACTCGGTGATTGGTTTCCTCTTGGAGCTATTGCGAGCAGGAGATATGCACTTCTGAACAGAGTCCCTTTACTTCCCCACGAAGAACTTCTTTGCAAAGAAGCAATGCTTCTTCATACATGCTTGGAACTTGAAGAACCGGACTTTCCGTCTTCAGACATTTTGTCTCATTATAGAACTAAGATATCTTTCATTAATTTGATGCGTTTCCAGCATTGTGCCCGTTGGTTACTAATGAAATCGAGGGCATGTATAAGTGTTTCTTCTCATTCGCATGGCACAATTCTCTGTAGCCTCTGCAAACGTGACTGTTACATAGCATATGTTGACTGCAGCTGTCAGATGCATCCTGTATGCCTACGTCATGATGTCAAATCTCTTGACTTCACCTGTGGGAGCAAACACACTCTTTATTTGAGAGAGGATATTGGCGATATGGAAGCTGCAGCCAAGATGTTTGAGAAGGAAGATAGGATATTGGATGAAATAAGCAATCAATCCAAAAGTGACCAAAATATGTATTCACATCCTTTGTCAGATATGTTTCAGAGAGCTGAAGCAAATGGGTACGAACCCTATTGTGAGCTTAAACTTGATTCTATCATAGAATTTTATACAACTCCAGAACAGTCAACAAATAATCAAGAGTCTGGTACACAAAGTCCAGTATTTTTCAGACATTGCTCTGAAAATCACAAACCAGAAGTGTCTGTGGTTTCCTTTTCTGCTGCATCCACCCTTTGTTCTCTTTCAGAACCTCTTGACTTCTCTGCTCCCAAAAATGCCGAGGGGCAGACTAACTTGAAAAAGGGCAGTATTGATTTTGAAGAGCTTGGTGAAAGAATATCCAACAGTGGATGCAAATCTTCACTCTCCCCTGCTCCGAATCACGGAAGCTCGGCTAAACTGCATGGTGATCTTCAGAGACCTGACATGAAGCCCTTAGTGGATAACGAGAGTGATGATTCTGATTCTGGGATATTTAGGGTAAAGCGTCCTTCCTCTCTGAAAGCTGAGAAAAGAAACGCAAAGGCTATGTCTTTGAGGCGTTCTGAACAACAGCGACTTAAACGATTGCAGAAAGTCCTTCCTGAAGGCAAAAGCGGGCAACAAATGGGTTACAGAACCAGTGAGTCAAGTTACAAATATAATCCTGTTAATCATAAAGTTGATATGCAAATATCCTCAAAGGACAGATTGGTAAGGGGAAATGGAACTCCCATTTCTGTAACATATAGAAAGTCGGGTAATGAGGAAATTAGTATGCATATGCAGCGAGATCACCACCGGAGAGAGAGGTTGCAGCAAACTTATAGGGAAGCACCTTCCATTGAGATTGGGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCGTATTTGGGCATAGAGAGCAGGTTGAATTGA 2565 0.4218 MVEGRVRLSEEARNGLEILKRKRLQRAKSVTATQTSVANMINRSGGDALRGSASCGPRLHGNADIFFKRKVDKFDTSDLEWTEKIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRSYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWHEVGCGKMETVEYACDVDGSAFSSSPTDQLGNSNWNLQKLSWLPKSTLRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVREHVYTTDILSNDGEDGAFDVLLGKTTLFPPNILLEHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFALGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLHTCLELEEPDFPSSDILSHYRTKISFINLMRFQHCARWLLMKSRACISVSSHSHGTILCSLCKRDCYIAYVDCSCQMHPVCLRHDVKSLDFTCGSKHTLYLREDIGDMEAAAKMFEKEDRILDEISNQSKSDQNMYSHPLSDMFQRAEANGYEPYCELKLDSIIEFYTTPEQSTNNQESGTQSPVFFRHCSENHKPEVSVVSFSAASTLCSLSEPLDFSAPKNAEGQTNLKKGSIDFEELGERISNSGCKSSLSPAPNHGSSAKLHGDLQRPDMKPLVDNESDDSDSGIFRVKRPSSLKAEKRNAKAMSLRRSEQQRLKRLQKVLPEGKSGQQMGYRTSESSYKYNPVNHKVDMQISSKDRLVRGNGTPISVTYRKSGNEEISMHMQRDHHRRERLQQTYREAPSIEIGPKRLKVRGPSYLGIESRLN 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00923 854 MobiDBLite consensus disorder prediction 672 718 - -
Car08g00923 854 Gene3D Cupin 81 410 - -
Car08g00923 854 Pfam jmjN domain 89 121 IPR003349 -
Car08g00923 854 SMART cupin_9 232 405 IPR003347 -
Car08g00923 854 MobiDBLite consensus disorder prediction 692 718 - -
Car08g00923 854 SMART JmjN_1 87 128 IPR003349 -
Car08g00923 854 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Car08g00923 854 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Car08g00923 854 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 850 - -
Car08g00923 854 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Car08g00923 854 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 52 850 - -
Car08g00923 854 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Car08g00923 854 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00923 Car-Chr8 8381644 8389209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00923 85 544 JUMONJI Transcription Factor Family AT2G34880 32.090 8.12e-61 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Car08g00923 JmjC 1.7e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00923 - - gmx:100798611 1400.96