Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00916 ATGCATCATTTTAAAACCCTAATCTTCTTTCCTCACCGCCTCCTCCCTCAACCGCGCGTCCTCACTACCTCCTCCCTCAATCGCGCGTCCTCACTGCCTCCTCCCTCATTCGTTCGTCCTCACTGCCTCCTCCCTCATTCGTTCGTTCTCACTGCCTCCTCCCTCAATCGTGCGTTTGCAGAAGAAGAAGTCATGGTGAAGTACTCCAGAGAACCCGATAATCCCACCAAATCCTGCAAAGCCAGAGGTGCTGACCTTAGGGTGCATTTCAAGAACACTAGGGAAACAGCGTTTGCCATCAGGAAGTTGCCATTGACAAAAGCAAAAAGATATTTGGAAGATGTTTTGGCCCACAAACAGGCCATTCCTTTCAGACGCTTTTGTCGTGGTGTTGGAAGGACTGCCCAAGCTAAGAACAGACATTCTAATGGGCAAGGACGCTGGCCTATCAAGTCAGCTAAATTCATTCTTGATTTGCTTAAGATAATTTTGAAGTATGTGAAAGGTTTGGATGTCGATGCTCTTTACGTTTCTCATGTCCAGGTCAACCAAGCTCAGAAGCAAAGACGTCGGACATACCGTGCTCATGGAAGAATCAATCCCTACATGTCATCTCCATGCCACATTGAACTGATTTTATCTGAGAAGGAAGAAGCTGTCCAGAAAGAGCCCGAGTCTCAGTTGGCAACCAACAAGAAGAAGTCTCAAGCTCTTTGA 717 0.4728 MHHFKTLIFFPHRLLPQPRVLTTSSLNRASSLPPPSFVRPHCLLPHSFVLTASSLNRAFAEEEVMVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLTKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPIKSAKFILDLLKIILKYVKGLDVDALYVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVQKEPESQLATNKKKSQAL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00916 238 CDD Ribosomal_L22 79 213 IPR001063 GO:0003735|GO:0005840|GO:0006412
Car08g00916 238 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 65 238 - -
Car08g00916 238 Pfam Ribosomal protein L22p/L17e 81 214 IPR001063 GO:0003735|GO:0005840|GO:0006412
Car08g00916 238 PANTHER 60S RIBOSOMAL PROTEIN L17 65 238 IPR005721 GO:0003735|GO:0006412|GO:0015934
Car08g00916 238 ProSitePatterns Ribosomal protein L22 signature. 189 213 IPR018260 GO:0003735|GO:0005840|GO:0006412
Car08g00916 238 SUPERFAMILY Ribosomal protein L22 65 216 IPR036394 GO:0003735|GO:0005840|GO:0006412
Car08g00916 238 TIGRFAM uL22_arch_euk: ribosomal protein uL22 68 216 IPR005721 GO:0003735|GO:0006412|GO:0015934
Car08g00916 238 Gene3D Ribosomal protein L22/L17 65 238 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00916 Car-Chr8 8286130 8287673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00916 65 235 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 83.815 3.78e-106 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00916 K02880 - jre:108982519 306.605