Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00906 ATGGGTTACGAAGACAATCCGTACCGCGACGAGGACGGTGAAGCGTTGATGGACTACGACGACATTCAATCCGATCGTGATCAATCACCGGAGCCACAACAGCTTGACGATTTCGAGGAAGACGTCGACGATTGGCATGGTCAAGAACGATCGCAGACTCCGGTCTACGACAACAATCCGGCCAAATCGAAGCCAAGAAAGAGGCTGGTTAAGAAGAGCGACACCGTGAAACAGTCGGTGGCTGCGCCGGATCTTGAAGACGAGTTGGAGGAGGATCGGTTTCCAgatgagggggaggaagggaggaagaggaagaaggggaaggatagtggatctggaaagagagagaagaggCTTAAAGGGGAAAAGATAATTGGAAACAGCAGTGGAAAAAGTGGGTCCAAATTTGGGGGTTCCAAGAAAGGGTTGGGTGGTAAGGCTGGAAATGATCATGATGGTGAAGTTAAAGAAATGTGGGATACAATTGCGGGAGGAGATTCTGAGGATGATCACGAGGGGGTTAGGAATCTGGATGATGATAACTTTATAGATGACACTGGAGTGGAGCCTGCTTTGTATGGTTATGATGAACCGCATTCTCCTGGTGATGCTCCCCAGGCGGAGGAAGGCGAGGAGGATGATGAAATCAAGGATCTATTCAAGATGGGTAAGAAAAAGAAGAAGAATGAGAGGAGTCCTGCAGAAATTGCTTTATTAGTTGAGAATGTCATGGCTGAGCTTGAGGTTACAGCAGAAGAGGATGCTGAACTTAATAGACAGTCCAAGCCTGCTATTAATAAACTCAAGAAGTTGCCTCTTCTTACAGAAGTCCTCTCAAAGAAACAGCTTCAACTAGAATTTTTGGATCATGGAGTGCTAACTTTATTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGTCTGCCGAATATTAACATACGCACAGCAATTTTGAAGATTTTGAATGATtttcctatagacctagagcagtatgatagaagagaacagctgaagaaaagcggtctTGGAAAGGTTATTATGTTTTTATCAAGGTCTGATGAAGAAATCAATGTAAATAAGAGATTAGCTAAGGATTTGGTTGATAAATGGAGCCGACCTATATTTAATAAGAGTACGCGGTTTGAGGACATGCGAAATGTTGAGGATGATAGGGTTCCTTACCAGAGGCCATCAGTTAAAAAGCCAGCAAATAAATCTGCAGGGATGCAATCTAGAGATGGTGACCTTGATTTGGATCTTTCACAGCCTAGGTCTGGACAGTCCTCTTCCAGGCAACTCACATCAAGGCCAGAAGCAACACCTTTGGATTTTGTGATCCGCCCCCAATCTAAAATTGATCCTGATGAAATTAGAGCACGGGCAAAACAAGCATCTCAGGACCAGCAGCGTATGAAGATGAATAAGAAATTGCAGCAGTTGAGGGCACCAAAAAAGAAGCAGCTTCAGGCCACAAAGCTGAGTGTGGAAGGTCGTGGCATGGTCAAATATTTTTAA 1515 0.4079 MGYEDNPYRDEDGEALMDYDDIQSDRDQSPEPQQLDDFEEDVDDWHGQERSQTPVYDNNPAKSKPRKRLVKKSDTVKQSVAAPDLEDELEEDRFPDEGEEGRKRKKGKDSGSGKREKRLKGEKIIGNSSGKSGSKFGGSKKGLGGKAGNDHDGEVKEMWDTIAGGDSEDDHEGVRNLDDDNFIDDTGVEPALYGYDEPHSPGDAPQAEEGEEDDEIKDLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQSKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLEQYDRREQLKKSGLGKVIMFLSRSDEEINVNKRLAKDLVDKWSRPIFNKSTRFEDMRNVEDDRVPYQRPSVKKPANKSAGMQSRDGDLDLDLSQPRSGQSSSRQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQASQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMVKYF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00906 504 MobiDBLite consensus disorder prediction 96 124 - -
Car08g00906 504 ProSiteProfiles TFIIS N-terminal domain profile. 294 377 IPR017923 -
Car08g00906 504 MobiDBLite consensus disorder prediction 449 465 - -
Car08g00906 504 MobiDBLite consensus disorder prediction 421 437 - -
Car08g00906 504 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 233 380 IPR035441 -
Car08g00906 504 PANTHER PROTEIN IWS1 HOMOLOG 1 1 503 - -
Car08g00906 504 MobiDBLite consensus disorder prediction 1 33 - -
Car08g00906 504 MobiDBLite consensus disorder prediction 145 182 - -
Car08g00906 504 PANTHER PROTEIN IWS1 HOMOLOG 1 1 503 IPR044204 GO:0009742|GO:0032784
Car08g00906 504 Coils Coil 240 260 - -
Car08g00906 504 MobiDBLite consensus disorder prediction 386 487 - -
Car08g00906 504 Pfam TFIIS helical bundle-like domain 319 374 IPR017923 -
Car08g00906 504 MobiDBLite consensus disorder prediction 1 214 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Car08g00906 Med26 3.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00906 K17498 - gmx:100801805 799.66