LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car08g00896	ATGGGTCGGAAAGACGACGCCGTTTTAGCCACCGAAGATCAAATCACTAACAACAGCCCCGAACTCAAATCCTCTaagaagaagaacaaaaagaacaagaacaaACACGACCTTCAAAACGAAGAAAACACTCCCAAAAGAAAGCACGAAGAACTCATCAATCAAAACGACGCCGAATCAAATAAGAAAAGTAAAAAGAAGAAAAAGCATGACAAGGAGGAGAACGACAGTGGTAACGGCGATGACACGGTTTCCGCGTCGGGTGACCCCATTGCAGTTACTGGAAAGAATGCTGAAGACGCGAAATACGCGGCGGTTAAAACTTTCGTTGATTCGGGGCTTCCTGAGAATGTGCTTGAGTGTTGCAAGGGTTTTGAGAAACCTTCTCCGATTCAGTCACTAACTTGGCCTTTTTTATTGGACGGTCGTGATTTAATTGGAATTGCAGCTACTGGTTCAGGGAAGACACTTGCTTTTGGAATACCGGCAATTATGCATGTTTTGAATAAGCGGAAGAGTAAGGGTTCTTCCAAGGGTCGTAACCCTCTTTGCCTTATGCTCTCTCCTACAAGGGAGCTTGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAGTCTTGTGGCGTGGAATCAATTTGTTTGTATGGTGGAACCTCAAAAGGACCACAAATCTCTGCACTTAAATCTGGCGTTGACATTGTCATTGGAACCCCTGGTCGTATCCAAGATCTGGTTGAAATGGGTATCTGTTGCCTTAAAGAAGTATCTTTTGCGGTGCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTCCGCTCAATACTTGGTCAGACATGTTCTGTTCGTCAAATGGTCATGTTCAGTGCTACATGGCCTTTAGCAGTTCATCACTTGGCGCAGGAATTTATGGATCCCAACCCTATAAAAGTTGTTGTAGGCTCAGAGGATTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGACGAGCGGGCACGTGATAAGCGCTTGGTTGCTTTACTAGAGAAATACCACAAATCTAAGAAGAATCGAGTATTGGTCTTTGTTTTATACAAATTTGAAACCACACGAGTTGAAAGAATGCTTCAACAAGGGGGATGGAAGGCCGTGTCAATAAGTGGGGACAAATCACAGAATGAGCGCACTAAGGCACTGTCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCAACTGATGTGGCAGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGGCGAACTGGACGAGCTGGTAAGAAAGGCGTTGCCCATACATTCTTCACCCAAGCGAATAAGGGACTTTCTGGGGAGCTTGTAAATGTTTTAAGAGAAGCAGGTCAAGTTGTGCCAGATGCTCTTTTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTTCTGCTGATGCTCCAAAGTCTAAAAAAATAACATTTGACAACTCTGATGAAGACTAA	1581	0.425	MGRKDDAVLATEDQITNNSPELKSSKKKNKKNKNKHDLQNEENTPKRKHEELINQNDAESNKKSKKKKKHDKEENDSGNGDDTVSASGDPIAVTGKNAEDAKYAAVKTFVDSGLPENVLECCKGFEKPSPIQSLTWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVLNKRKSKGSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESICLYGGTSKGPQISALKSGVDIVIGTPGRIQDLVEMGICCLKEVSFAVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLAVHHLAQEFMDPNPIKVVVGSEDLAANHDVMQIVEVLDERARDKRLVALLEKYHKSKKNRVLVFVLYKFETTRVERMLQQGGWKAVSISGDKSQNERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTQANKGLSGELVNVLREAGQVVPDALLKFGTHVKKKESKLYGAHFKEISADAPKSKKITFDNSDED	526

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car08g00896	526	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	260	268	IPR000629	-
	Car08g00896	526	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	107	133	IPR014014	GO:0003724
	Car08g00896	526	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	136	314	IPR014001	-
	Car08g00896	526	Pfam	DEAD/DEAH box helicase	130	299	IPR011545	GO:0003676\|GO:0005524
	Car08g00896	526	Pfam	Helicase conserved C-terminal domain	342	451	IPR001650	-
	Car08g00896	526	CDD	DEADc	123	315	-	-
	Car08g00896	526	MobiDBLite	consensus disorder prediction	34	79	-	-
	Car08g00896	526	MobiDBLite	consensus disorder prediction	1	92	-	-
	Car08g00896	526	Coils	Coil	49	75	-	-
	Car08g00896	526	Gene3D	-	53	317	IPR027417	-
	Car08g00896	526	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	16	512	-	-
	Car08g00896	526	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	327	490	IPR001650	-
	Car08g00896	526	CDD	SF2_C_DEAD	328	460	-	-
	Car08g00896	526	Gene3D	-	318	493	IPR027417	-
	Car08g00896	526	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	181	463	IPR027417	-
	Car08g00896	526	PANTHER	BNAA08G07020D PROTEIN	16	512	-	-
	Car08g00896	526	SMART	helicmild6	370	451	IPR001650	-
	Car08g00896	526	SMART	ultradead3	124	331	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car08g00896	Car-Chr8	8043241	8048197	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car08g00896	106	459	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.022	4.35e-51	178

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car08g00896	K14811		-	gmx:100305353	806.208