Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00887 ATGGAATTGAGGCCTTTATATAAACCCTCGCAAACCCTTCATTCTGATCACAGTACACACATTCTCTTCTCTTCTTTGCGGCTAAGTTTAACGCAGCATTCTCTCCTTCAAGCTTTAGCAGTAATGGGTAAAGAGAAAGTTCACATCAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAATCAACCACAACTGGTCACTTGATCTACAAGCTTGGGGGTATTGACAAGCGTGTCATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGTATCACAATTGACATTGCTCTTTGGAAGTTTGAGACAACTAAGTACTACTGCACTGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATTACTGGAACATCCCAAGCTGATTGTGCTGTCCTTATCATTGATTCCACAACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCTACTACACCCAAGTACTCCAAGGCTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGTTACAACCCAGAAAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAACCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCCCTTGACCAAATCAATGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGATTACCACTTCAAGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTGTGGGACGTGTTGAGACTGGTGTCTTGAAACCAGGATTTGTCGTGACTTTTGCACCAACTGGATTGGCAACTGAAGTCAAGTCTGTTGAGATGCATCACGAAGCTCTGACTGAGGCCCTTCCCGGTGACAATGTTGGATTTAATGTTAAGAATGTTGCTGTCAAGGATCTCAAGCGTGGTTATGTTGCATCAAACTCCAAGGATGACCCCGCCAAGGAGGCTGCTAACTTTACATTCCCAAGTTATCATCATGAATCACCCTGGGCAGATTGGAAACGGTTATGCCCCTGTTCTTGA 1173 0.4493 MELRPLYKPSQTLHSDHSTHILFSSLRLSLTQHSLLQALAVMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGFVVTFAPTGLATEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTFPSYHHESPWADWKRLCPCS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00887 390 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 46 271 IPR000795 GO:0003924|GO:0005525
Car08g00887 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 290 IPR027417 -
Car08g00887 390 Gene3D Translation factors 270 357 - -
Car08g00887 390 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 42 370 - -
Car08g00887 390 Pfam Elongation factor Tu domain 2 289 354 IPR004161 GO:0005525
Car08g00887 390 CDD EF1_alpha 50 268 - -
Car08g00887 390 Pfam Elongation factor Tu GTP binding domain 47 263 IPR000795 GO:0003924|GO:0005525
Car08g00887 390 CDD EF1_alpha_II 271 361 - -
Car08g00887 390 Gene3D - 35 269 IPR027417 -
Car08g00887 390 PRINTS GTP-binding elongation factor signature 50 63 IPR000795 GO:0003924|GO:0005525
Car08g00887 390 PRINTS GTP-binding elongation factor signature 129 139 IPR000795 GO:0003924|GO:0005525
Car08g00887 390 PRINTS GTP-binding elongation factor signature 109 117 IPR000795 GO:0003924|GO:0005525
Car08g00887 390 PRINTS GTP-binding elongation factor signature 189 198 IPR000795 GO:0003924|GO:0005525
Car08g00887 390 PRINTS GTP-binding elongation factor signature 145 156 IPR000795 GO:0003924|GO:0005525
Car08g00887 390 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 102 117 IPR031157 -
Car08g00887 390 PANTHER TRANSLATION FACTOR 42 370 - -
Car08g00887 390 SUPERFAMILY Translation proteins 267 362 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00887 Car-Chr8 7958931 7962009 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00887 42 370 Eukaryotic Initiation Factors Gene Family AT5G60390 96.960 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00887 K03231 - gmx:110008577 657.521