Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00886 ATGATggagagtggtggaggaggaggaggagaaggGTATGACGGGGTGGTGATGACGATGACAAGAGACCCGAAGCCGAGGCTCAGGTGGACAACCGATCTTCACGACCGGTTCGTCGACGCTGTCACAAAGCTTGGTGGCCCTGACAAGGCAACTCCAAAGTCTGTTCTAAGGTTAATGGGATTGAAAGGTTTGACATTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAAGTACAGGCTCGAAAACAAAATGAAGAACAATACAAAGAGAATAACAGATGTTCGTATGTAAATTTCAGTAACCATTCTTCAGGGACTAATACAACTTATGGAGGTGATAATGAAGGAAGAGAAATCCCAATAGCAAAAGCACTAAGGCAACAAATTGAAGTTCAAAGAAGATTGGAAGAACAACTTGAGGTACAAAAGAAATTGCAAATGAGAATAGAGGTTCAAGGGAAGTATTTGCAGGCAGTGTTAGAGAAAGCACAAAGTAGTTTTTCTCAAGATGGACAAGGCAATGTTGAAGCATCAAAAGCTCAATTAGATGAATTCAACTTAGCTTTGTCAAATTTCATGGAAAATATGAATAATAAAGATAGTAAAGAAAACATAGTAGGCATGAGTGAATATTATGATAAGAATCATAGCTCATCTTTCAATTATCAAGAAGTACTAGGGGAAGAAGAAAAGAAGGATCTAAAACCTCAAGTTGAAGGGGGTTCAACACAGCTAGACTTAAACATCAAGGGTAATGAAGTTGCATATGCAAATGGAGCTGAAATGGAATCAAAGATGGTTTCATATAGGGTATACCATTTTTGA 837 0.3632 MMESGGGGGGEGYDGVVMTMTRDPKPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQVQARKQNEEQYKENNRCSYVNFSNHSSGTNTTYGGDNEGREIPIAKALRQQIEVQRRLEEQLEVQKKLQMRIEVQGKYLQAVLEKAQSSFSQDGQGNVEASKAQLDEFNLALSNFMENMNNKDSKENIVGMSEYYDKNHSSSFNYQEVLGEEEKKDLKPQVEGGSTQLDLNIKGNEVAYANGAEMESKMVSYRVYHF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00886 278 Pfam Myb-like DNA-binding domain 28 78 IPR001005 -
Car08g00886 278 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 14 259 - -
Car08g00886 278 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 14 259 IPR044848 GO:0003700
Car08g00886 278 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 25 80 IPR006447 GO:0003677
Car08g00886 278 Gene3D - 24 82 - -
Car08g00886 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 82 IPR017930 -
Car08g00886 278 Coils Coil 126 146 - -
Car08g00886 278 SUPERFAMILY Homeodomain-like 25 80 IPR009057 -
Car08g00886 278 Pfam MYB-CC type transfactor, LHEQLE motif 124 169 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00886 Car-Chr8 7954118 7957236 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00886 16 195 G2-like Transcription Factor Family AT3G24120 52.688 8.35e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Car08g00886 Myb_DNA-binding 2.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00886 - - gmx:100819756 395.586