Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00885 ATGGGTAAAGAGAAAGTTCACATCAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAATCAACCACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTCATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGTATCACAATTGACATTGCTCTTTGGAAGTTTGAGACAACTAAGTACTACTGCACTGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATTACTGGAACATCCCAAGCTGATTGTGCTGTCCTTATCATTGATTCCACAACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGTAACAAGATGGATGCTACTACACCCAAGTACTCCAAGGCTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTACAACCCAGAAAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAACCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCCCTTGACCAAATCAATGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGATTACCACTTCAAGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTGTTGGACGTGTTGAGACTGGTGTCTTGAAACCAGGATTTGTCGTGACTTTTGCACCAACTGGATTGGCAACTGAAGTCAAGTCTGTTGAGATGCATCACGAAGCTCTGACTGAGGCCCTTCCCGGTGACAATGTTGGATTTAATGTTAAGAATGTTGCTGTCAAGGATCTCAAGCGTGGTTATGTTGCATCAAACTCCAAGGATGACCCCGCCAAGGAGGCTGCTAACTTTACATTCCCAAGTTATCATCATGAATCACCCTGGGCAGATTGGAAACGGTTATGCCCCTGTTCTTGA 1050 0.4533 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGFVVTFAPTGLATEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTFPSYHHESPWADWKRLCPCS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00885 349 SUPERFAMILY Translation proteins 226 321 IPR009000 -
Car08g00885 349 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 329 - -
Car08g00885 349 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
Car08g00885 349 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Car08g00885 349 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Car08g00885 349 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Car08g00885 349 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Car08g00885 349 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Car08g00885 349 Gene3D - 1 226 IPR027417 -
Car08g00885 349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Car08g00885 349 CDD EF1_alpha_II 230 320 - -
Car08g00885 349 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Car08g00885 349 Gene3D Translation factors 229 316 - -
Car08g00885 349 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Car08g00885 349 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Car08g00885 349 CDD EF1_alpha 9 227 - -
Car08g00885 349 PANTHER TRANSLATION FACTOR 1 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00885 Car-Chr8 7924473 7926465 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00885 1 329 Eukaryotic Initiation Factors Gene Family AT5G60390 96.960 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00885 K03231 - gmx:110008577 657.521