Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00873 ATGAGCGTTCCACCACCACCGCCATCAGGGATGTGGCCAACAACAACTCATCCACCATTCACAGTATCACAGTGGCAAGAACTTGAACACCAAGCACTCATCTTCAAGTATCTCAAAGCTGGTTTGTCGGTTCCACCAGACCTTCTCCTACCTATTCGGAAAAGTCTTCAATTCATTTCTCACCGTCCTTCTTCTTTGGGTTATTATGGGAAGAAAATTGACCCTGAACCAGGTAGGTGTAGAAGAACCGATGGAAAAAAATGGAGATGTTCTAGGGATGCTCATCCTGATTCTAAATACTGTGACCGTCATATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAAtcttcttcttcttcttctcaatctcaatctcaatctcaatctcaatcttcatcttctgtttcttcaacttcACAACTTGTTTCTTCTATTGGAACTACTACTGTTAGTACTGGTTCTGTTTCTGTTACTTCAAATTCAACCTTTCATACACTTCCTTTGCATACAAATGGTACACGTGAAGGTTTAGGTTTCACTCTTGGGAACACAATACCCGACATGGACCCTATGCTTCTTCCTCTTCAGGGTTCTAAGAAACCTTATAGGTTTGGACTGAACTCCGAAGCAGATGAGCACAACCTTTTACAGAAAGATCTCGGCACTGTGAAGTATCAAGGCTACGATTTTACATCAGATGGCATGTGGTATAATAATATGTCTCAGATTCCATCAAACACCGTCTCCGAATCAAGGAGTGGTTCTACCACCATGACTGGCAACTACTTCCAACAGCGAACAACACGAGAACCTGAGCTTTTTAGCCTCGACGCTGCAAGGTCCAAGGAAATCGTCTTTAACAGTCAGTTATGTTCAACAGGTAGTTTGAAACAGGACTATGAGTCCCCTCAGTCTCTCTTCAGTGACTGGCACTGGAAGAAAGATTTAGCCTCCTCCGCCGCCATCGAGTATAGGCCAAATAAGGATTTTAACACCGACCCGGATGCCAATGTTGATTCAAATGGTACTTTATGA 1041 0.4083 MSVPPPPPSGMWPTTTHPPFTVSQWQELEHQALIFKYLKAGLSVPPDLLLPIRKSLQFISHRPSSLGYYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVESSSSSSQSQSQSQSQSSSSVSSTSQLVSSIGTTTVSTGSVSVTSNSTFHTLPLHTNGTREGLGFTLGNTIPDMDPMLLPLQGSKKPYRFGLNSEADEHNLLQKDLGTVKYQGYDFTSDGMWYNNMSQIPSNTVSESRSGSTTMTGNYFQQRTTREPELFSLDAARSKEIVFNSQLCSTGSLKQDYESPQSLFSDWHWKKDLASSAAIEYRPNKDFNTDPDANVDSNGTL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00873 346 MobiDBLite consensus disorder prediction 70 139 - -
Car08g00873 346 Pfam WRC 75 117 IPR014977 -
Car08g00873 346 SMART QLQ_2 18 54 IPR014978 GO:0005524|GO:0005634|GO:0006355
Car08g00873 346 ProSiteProfiles WRC domain profile. 74 118 IPR014977 -
Car08g00873 346 Pfam QLQ 19 53 IPR014978 GO:0005524|GO:0005634|GO:0006355
Car08g00873 346 PANTHER - 1 342 IPR031137 GO:0005634|GO:0006351|GO:0032502
Car08g00873 346 ProSiteProfiles QLQ domain profile. 19 54 IPR014978 GO:0005524|GO:0005634|GO:0006355
Car08g00873 346 PANTHER GROWTH-REGULATING FACTOR 1 342 - -
Car08g00873 346 MobiDBLite consensus disorder prediction 116 139 - -
Car08g00873 346 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00873 Car-Chr8 7806069 7808911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00873 19 207 GRF Transcription Factor Family AT4G37740 42.718 1.46e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Car08g00873 WRC 2.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00873 - - lja:Lj2g3v1537380.1 450.669