Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00861 ATGGCTGTGAATCTGACACAAGGTGCGATAATAACTATGTGTTTCACTTCGGAGGAATTGCAACCGGTTCTTCAAGTTATCGATTTGAAGCTTGTGCAGTCGCAGCAGAATAGTTCTACTGAGAGGTATAGGCTTGTTCTGTCCGATGGTTCGTATTATCAACAAGGAATGCTCGCTACACAGAAGAATGAGTTGGTTCATTCTGGAAGGTTGCAGAAAGGTTCCATTGTTAAGCTTCATCAATTCATTTGTAACGATGTTCAGAATCGCAAGATTATCATCATAGTTGAGCTGGATGTTATACTGGACAAATGTGATTTGGTTGGAGAACCTGTCCCCGCACCAAAAGAAGCGCCTTCACAATCAGCTGTGAGTCAAGCACGAAATGTACAATCTGCTGCTGGTCAATCAGGAAATACCACTGGGATTTCACAGTCTTTAAATAGTAATTCACATGCAGGTGGCATTAATGCTAGACCAAATGTGTCTATGCCATCTATGGATCGTCCAAAAGTGAATCCTCCTGCTAGCAGTGTCTATTCTAACAGTTCCGAGCCTGTTAGATATGGTGCATCTAATGCTCCTCCATCTTATCCTAAACCTGAGCCTGGATCCAGTTTGAATAGACCAGCACCGTCAAATGGGTCTTATGGTGTACAGAATACAAGTTTCCGCAATCCACAATTTGAGGCTTCAAAACCAATGCAAAATTCTAATGCTCGTCCGCCTCAGCCTATGTACAGACCGCAATCTTCAATGTACACCAACACCAACACCAACAGAGGGCCTATAGGAAGAAATGATGCCCCCCCAAGGATAGTTCCAATATCTGCATTGAATCCGTATCAGAGTAATTGGACAATTAAAGCCAGAGTAACGGCTAAGGGGGAACTTAGGCACTATAACAATGCCCGAGGTGAGGGAAAAGTATTTTCTTTTGATCTTTTGGATTCTGATGGTGGAGAAATCCGGGCAACTTGCTTTAATGCTGTGGCTGATCAGTTTTATAACGTAATAGAACATGGTAAAGTCTTTCTCATTTCCAGAGGAAATTTAAAGCCAGCTCAGAAGAATTTTAATCACCTTCCTAATGATCACGAGATAACCCTTGATATAACATCAGTTATTCAGCCATGGCTTGAAGATGATAATTCAATTCCAAAGCAGATATTTAATTTTCGTCCCATTGGTGACATAGAAAGTATGGAAAACAACAGCATTGTGGATTTGATTGCTGTGGTGACTTCTATCAGTCCTACAGCTTCAATCATGAGAAAAAATGGCACTGAAACGCAGAAGAGAACTCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAATTAACTGTATGGGGAAATTTTTGTAACGTGGAAGGACAAAGGCTGCAAGTTATTTGTGACTCGGGGGCATTTCCAATTTTGGCTGTAAAGGCTGCCAGAATAAATGATTTCAATGGGAAGTCTGTTGGGACTATAGGCACTAGCCAATTATTTGTAGAACCTGATTCTGCAGAGGCTTATACTCTGAGAGAATGGTTTGACAAGGAAGGGAGGAATGTACCGAGTCAATCTCTTTCTAGAGAATCATCTAGTTTTGGTAAAAGTGAAGTGCGGAAGACTGTCTCTCAAATTAAAGATGAAAAGTTAGGGACTTCAGAGAAGCCTGATTGGATAACCGTATGTGCTAGTGTTTCTTTCGTTAAAGTTGATAATTTTTGCTACACAGCTTGTCCTATCATGATAGGGGATAGGCAATGTAACAAAAAGGTTACTAACAATGGAGATGGGAAATGGCGCTGTGACAGGTGTGATCAGTCTGTTGATGCTTGTGATTATAGGTACATACTGCAATTGCAGATACAGGATCACACTGGTGTAACATGGGCTACTGCTTTCCAGGAGGGTGGCGAGGAGATCCTAGGTATACCTGCAAAAGACTTGTATTTTCTGAAATATGAAGAACATGATGATGAAAGATTTGCAGAAATCATCCGTAAGGTTCTCTTCACTAAATATGTGTTCAAGTTAAAAGTAAAAGAGGAGACATACGGTGATGAACAACGTGTTAAGTCGACAGTAGTAAAAGCAGAGAAGGTAATCTTTGCATCTGAATCTAGATTTCTTCTGGATTTGATTGATAAACTTAAGTCTGAGAAAGCAGAAGGTGCCACCATTAACTCTGTTATCAATAATACTGGACTGGGGAGCTTTGGACAAACTACACCGCCAGTATATAATCCTATAAAGCCCAACACTAATACTGGTAGAGATTATGGGATGCCAGCAAATCAAGTGGGCCAGTATGGAAACCAGTATAGCAGTTCTGTTGCTTCGTCAGCGGCTCCTGGTTCATACGTGTCATGTAGCAACTGTGGAGCCTCTGGCCATAGCTCTGCGCAATGCCTAAATCTTAGAAATCAATCTGGACAGTCTACTGGTGCGGCCTATGGCAACAGGGTATCTGCTGGATCAGGTGCCGCTTCTGGTGAttgctataaatgccatcaacctggacattgggcaagggactgtccGGGTATGGGTGCAGCAGCACATTCAGATCAGCCGATGCAGCGCCCATCCGCTGGATCAGGTGCGGCTTCCGGAGAAtgctataaatgccatcaaactggacattgggcaagagactgtcctGGCATCAGTGCAGCACCTCCTTCTTATGGAGGCAATAATGTAATGCAAGGAAGATATGGTAATGGTATAGCTCAAAATCAACAGTATGGAGGATACTGA 2754 0.4092 MAVNLTQGAIITMCFTSEELQPVLQVIDLKLVQSQQNSSTERYRLVLSDGSYYQQGMLATQKNELVHSGRLQKGSIVKLHQFICNDVQNRKIIIIVELDVILDKCDLVGEPVPAPKEAPSQSAVSQARNVQSAAGQSGNTTGISQSLNSNSHAGGINARPNVSMPSMDRPKVNPPASSVYSNSSEPVRYGASNAPPSYPKPEPGSSLNRPAPSNGSYGVQNTSFRNPQFEASKPMQNSNARPPQPMYRPQSSMYTNTNTNRGPIGRNDAPPRIVPISALNPYQSNWTIKARVTAKGELRHYNNARGEGKVFSFDLLDSDGGEIRATCFNAVADQFYNVIEHGKVFLISRGNLKPAQKNFNHLPNDHEITLDITSVIQPWLEDDNSIPKQIFNFRPIGDIESMENNSIVDLIAVVTSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTVWGNFCNVEGQRLQVICDSGAFPILAVKAARINDFNGKSVGTIGTSQLFVEPDSAEAYTLREWFDKEGRNVPSQSLSRESSSFGKSEVRKTVSQIKDEKLGTSEKPDWITVCASVSFVKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSVDACDYRYILQLQIQDHTGVTWATAFQEGGEEILGIPAKDLYFLKYEEHDDERFAEIIRKVLFTKYVFKLKVKEETYGDEQRVKSTVVKAEKVIFASESRFLLDLIDKLKSEKAEGATINSVINNTGLGSFGQTTPPVYNPIKPNTNTGRDYGMPANQVGQYGNQYSSSVASSAAPGSYVSCSNCGASGHSSAQCLNLRNQSGQSTGAAYGNRVSAGSGAASGDCYKCHQPGHWARDCPGMGAAAHSDQPMQRPSAGSGAASGECYKCHQTGHWARDCPGISAAPPSYGGNNVMQGRYGNGIAQNQQYGGY 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00861 917 CDD RPA1_DBD_B 407 514 - -
Car08g00861 917 PANTHER REPLICATION FACTOR A 1, RFA1 3 755 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Car08g00861 917 Pfam Replication factor-A C terminal domain 557 708 IPR013955 -
Car08g00861 917 Gene3D - 850 894 - -
Car08g00861 917 Pfam OB-fold nucleic acid binding domain 286 374 IPR004365 GO:0003676
Car08g00861 917 SUPERFAMILY Nucleic acid-binding proteins 538 715 IPR012340 -
Car08g00861 917 SUPERFAMILY Nucleic acid-binding proteins 1 107 IPR012340 -
Car08g00861 917 CDD RPA1N 8 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Car08g00861 917 SUPERFAMILY Nucleic acid-binding proteins 272 385 IPR012340 -
Car08g00861 917 Gene3D - 3 114 IPR012340 -
Car08g00861 917 Gene3D - 525 715 IPR012340 -
Car08g00861 917 CDD RPA1_DBD_A 275 378 - -
Car08g00861 917 MobiDBLite consensus disorder prediction 175 190 - -
Car08g00861 917 Pfam Zinc knuckle 870 885 IPR001878 GO:0003676|GO:0008270
Car08g00861 917 Pfam Zinc knuckle 831 845 IPR001878 GO:0003676|GO:0008270
Car08g00861 917 ProSiteProfiles Zinc finger CCHC-type profile. 871 885 IPR001878 GO:0003676|GO:0008270
Car08g00861 917 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Car08g00861 917 Gene3D - 784 848 - -
Car08g00861 917 MobiDBLite consensus disorder prediction 119 157 - -
Car08g00861 917 Pfam Replication protein A OB domain 396 499 IPR031657 -
Car08g00861 917 PANTHER REPLICATION PROTEIN A SUBUNIT 3 755 - -
Car08g00861 917 SUPERFAMILY Nucleic acid-binding proteins 391 520 IPR012340 -
Car08g00861 917 ProSiteProfiles Zinc finger CCHC-type profile. 788 801 IPR001878 GO:0003676|GO:0008270
Car08g00861 917 Gene3D - 272 381 IPR012340 -
Car08g00861 917 SUPERFAMILY Retrovirus zinc finger-like domains 782 846 IPR036875 GO:0003676|GO:0008270
Car08g00861 917 SMART c2hcfinal6 787 803 IPR001878 GO:0003676|GO:0008270
Car08g00861 917 SMART c2hcfinal6 830 846 IPR001878 GO:0003676|GO:0008270
Car08g00861 917 SMART c2hcfinal6 870 886 IPR001878 GO:0003676|GO:0008270
Car08g00861 917 Gene3D - 385 524 IPR012340 -
Car08g00861 917 SUPERFAMILY Retrovirus zinc finger-like domains 855 888 IPR036875 GO:0003676|GO:0008270
Car08g00861 917 MobiDBLite consensus disorder prediction 113 269 - -
Car08g00861 917 CDD RPA1_DBD_C 541 714 IPR013955 -
Car08g00861 917 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 209 714 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Car08g00861 917 MobiDBLite consensus disorder prediction 207 264 - -
Car08g00861 917 ProSiteProfiles Zinc finger CCHC-type profile. 831 845 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00861 Car-Chr8 7721142 7725127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00861 1 814 Core DNA Replication Machinery Family AT5G45400 52.681 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00861 K07466 - gmx:100778597 1292.33