Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00844 ATGGAAGAGAACTTGGAGGTTCTAGAAGAGCTTCACAACGTCGAGGCCGAGATAGAAGATGTCCAAGAACAAATTAGAGCCTTAATCGAAAAGCAAGAGAGGTTGTACGAGAGAAAATCTGAGTTGAATTCTATTCTGGAAGCGTGTAAAGAATCTGAAAACCAGGTCAATAATAATGCAAGTTCAAGCACCGTGGAGAATTGGAATGCACCATTTGAATGGGATTCTAAAGCAGATGATCTTAGGTTAAACATTTTTGGCATTTCATCTTACCGTGCAAATCAAAGAGAGATAATTAATGCCATAATGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGTCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAGTTGCCCTAGTTGTCAGCCCGTTGCTTTCGTTAATTCAAGATCAGGTAATGGGTTTGACTGCTTTGGGCATCCCAGCACATATGTTAACTTCAACGACAAGTAAGGAAAATGAGAAGTTCATATACAAGGCTTTGGAGAAGGGTGAGGGGGAACTCAAAATATTGTATGTTACTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAGTGCCACCATGCCGGTCGTCTCTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGTCATGACTTTCGACCTGATTACAAGAACCTTGGCATTCTCAAGACTCAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTACACATCCGTAGATGTGTCAAATTTGTTAGCACAGTCAATAGGCCAAATTTATTTTATATGGTAAAGGAAAAGTCATCAGTCAGTAAGGTGGTTGTTGACGAAATTGCTGAGTTCATTCAAGAATCTTATCCAAATCATGAATCCGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGCTAAGGGAGAGAGGAATTTCAGCTGATCATTATCATGCAGATATGGATGTAAATAATCGTGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTTGGTACAGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGGCTTCCTTCTGAATGCCTATTATACTTCAGACCTGGTGATGTTTCTCGACAGAGCTCAATGGTCTTCTACGAAAATTCAGGACTACAGAATCTCTATGACATAGTACGATATTGTCAGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTTCGTCATTTTGCTGAGCCATTACAAGAGTGCGATGGGATGTGCGATATTTGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCTCGGCATGCAAAATTGATGGTTTCTTTGTTGCAAGAAATTCAGACAAGTGATCAGAGGTCAACAATGTTGCAATTAGTCGATAAAATGAAAGTAAAACAGAAGGAAATAGGTTCTGATTTAAAACGAGAAGAAATGGAGCAGCTCATTTTACACCTTTTACTGGACCGTGCTTTGAAAGAAGAATTTCAGCATACAGCTTATTCTACAAATGCTTATATTACAGTAGGACCATTGGCAAAGCAAATTTTGCAAGGGAAGAAGACTGTGAAGCTTGAGGTTTCTACTGAAAAGAAAACTAAAGCTTCTGTGAGATTGAAACGCTGCCTTGGGTCATCTGGCTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTTTCTTCCATTCATGGAGGAATACTCCCACACTCTGTCTTGTCTACTCAACAAATCAGCTTACTATGTTCTCAAAAACCAAACTCGCTCGAGCAGttgGAGAAAGTAATTGGCAAATTGAAGACAGAAAAGTATGGAAATAAGATTCTTGAGCAAATTGTAAAATATTCTGATTTCAAGCCGACGGATGAACAAGTAAGTGATGGTAGAGCCGCAAAAAGGTCCAAGACCAAGAAGAACCTTGTACTTATTGAGAGTAGTGGAGATGAAGCATGCTAA 2115 0.4043 MEENLEVLEELHNVEAEIEDVQEQIRALIEKQERLYERKSELNSILEACKESENQVNNNASSSTVENWNAPFEWDSKADDLRLNIFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGVALVVSPLLSLIQDQVMGLTALGIPAHMLTSTTSKENEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLIEMLHIRRCVKFVSTVNRPNLFYMVKEKSSVSKVVVDEIAEFIQESYPNHESGIVYCFSRKECEQVAKELRERGISADHYHADMDVNNREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVSRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECDGMCDICAFSSEVKEVDVSRHAKLMVSLLQEIQTSDQRSTMLQLVDKMKVKQKEIGSDLKREEMEQLILHLLLDRALKEEFQHTAYSTNAYITVGPLAKQILQGKKTVKLEVSTEKKTKASVRLKRCLGSSGLELKLDELRKELSSIHGGILPHSVLSTQQISLLCSQKPNSLEQLEKVIGKLKTEKYGNKILEQIVKYSDFKPTDEQVSDGRAAKRSKTKKNLVLIESSGDEAC 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00844 704 Pfam RecQ zinc-binding 421 477 IPR032284 -
Car08g00844 704 ProSiteProfiles HRDC domain profile. 596 675 IPR002121 GO:0003676
Car08g00844 704 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 299 448 IPR001650 -
Car08g00844 704 SMART RQC_2 486 583 IPR018982 GO:0006260|GO:0006281|GO:0043138
Car08g00844 704 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 99 274 IPR014001 -
Car08g00844 704 Pfam Helicase conserved C-terminal domain 310 408 IPR001650 -
Car08g00844 704 Gene3D - 11 281 IPR027417 -
Car08g00844 704 PANTHER ATP-DEPENDENT DNA HELICASE Q1 9 682 - -
Car08g00844 704 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 84 509 IPR004589 GO:0004386|GO:0006310
Car08g00844 704 CDD DEXHc_RecQ1 73 281 - -
Car08g00844 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 425 IPR027417 -
Car08g00844 704 Pfam DEAD/DEAH box helicase 93 261 IPR011545 GO:0003676|GO:0005524
Car08g00844 704 Gene3D HRDC domain 600 668 IPR044876 -
Car08g00844 704 Gene3D - 482 583 IPR036388 -
Car08g00844 704 SMART ultradead3 87 290 IPR014001 -
Car08g00844 704 PANTHER DNA HELICASE RECQ FAMILY MEMBER 9 682 - -
Car08g00844 704 SMART helicmild6 328 409 IPR001650 -
Car08g00844 704 CDD SF2_C_RecQ 282 418 - -
Car08g00844 704 Coils Coil 4 38 - -
Car08g00844 704 Pfam HRDC domain 605 664 IPR002121 GO:0003676
Car08g00844 704 Pfam RQC domain 483 587 IPR018982 GO:0006260|GO:0006281|GO:0043138
Car08g00844 704 Gene3D - 282 478 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00844 Car-Chr8 7530661 7542031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00844 86 423 Eukaryotic Initiation Factors Gene Family AT3G19760 19.263 3.18e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00844 K10899 - gmx:100817635 1181.01