Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00827 ATGGGGTCTAGTGGTAGCAAAGCCACTTCTTCGTGCAGTTCGTCATCTTCTTCTTCGTGCAGTTTACGAAAAGGTCGATCCAAACGGCATAGAGGTTTTCCTTCTTATTGTCTTGGAACAACTTCTGGATCTCGTGACAGTGATAATGATGACAAGGTTTCTGATCAGAATAAAGTAAATGGAAGTGATGCTACATACACCGGCAGCAATGACGTTGACACGGACGAAGTTAAATCAGAGTCTTTTCGAAAAGTTAAATCTGATGAAACACCTTGTGTGCCTTCTAGCATTGATCTTGATGAGTGGAGTCACACTGCATCCAGAACCGCTAGTAGCTCTGCCAATGGTTCTTCAACTCAGTCCACAAACCCTACAAGTCGGTTCCTTTCTCGTTTTAGTCTCATTCCGGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTAGGGTCATCTCGGCCTTGTCCTGTTTCATCAGCAAGTCTTTCGATGTTTAACAATGAAGACGAGCTTAATAGAAATGAAACTCAACAATGTAGTGACTTGCTTAATGCGTCTTTTGTTAATCGAGTCCCTATACAGTATCATCAAGATGATCCTCATAATTTAAGTTCAAATGCCCCAGCATTCGGTTTGGCTGGCAATTTGTCGAACAGTCCTACGCTGTCACCTATCCAGGATATGGTTAGGAACGGATATGCTACACAAGAGATGCGTGAGATAAACCTGTTTTCTCCAAGAATTCATAATGAGACGGTAAATGTAGAGACTAGGCATATGGATAGACGAAATGGAGCTCGTGAACCTGTTGACCGCAATGTACGTTTCAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCATCGCCGATCAGCATTGTCTGACTTTACCTTTTGCCCTCTGCAACAAGAGAGAGATGCTAATGAGGATGGTGGAAGACAAGTCGGGGAGACGGGTACAAGAGTCTCACCATCTGATCGTAACGCTTTAAATTTTCATACTACATCCGGGTATCCTCTACACAACATGTCTAGCTCCCCATTTAGCACCCAGGACTATGAGGTCGAGGCTTCACGGTCAAGAGAAACTAGGTATCAGGATCTGCTGGAACATAGATCCAATTTCCTTGAACGGAGAAGAAGAATACGATCCCAGGTTCGTGCTCTTCAGCGATTGGGTAGCCGGTTTGAGAATCTTTCTGGACATGACAGATCATGTATCTTGTCCGGTCAACATAGAAACGGTCGTTGTACATGCAGAACAAGTAGTCGCGATAACAATTCAAACGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTTGTTTTATCTTCCCGCCCTTCTGTATCTTCTATCGGATCTGTTCCTGCACCGGCTGAAGTTGTCGAATCCTTGCCTGTCAAATTATACACAAAGTCGCACAAACATCAAGAAGAACCTGTACAATGCTATATATGCCTTGTGGAGTATGAAGATGGCGACAGCATGCGAGTACTGCCTTGTCATCATGAATTTCATACAACATGTATAGACAAATGGCTTAAGGAGATTCACAGGGTATGTCCACTATGTAGGGGGGACATTTGTATATCAGATTCACTGCCAACAGAGAACTAA 1680 0.4333 MGSSGSKATSSCSSSSSSSCSLRKGRSKRHRGFPSYCLGTTSGSRDSDNDDKVSDQNKVNGSDATYTGSNDVDTDEVKSESFRKVKSDETPCVPSSIDLDEWSHTASRTASSSANGSSTQSTNPTSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPVSSASLSMFNNEDELNRNETQQCSDLLNASFVNRVPIQYHQDDPHNLSSNAPAFGLAGNLSNSPTLSPIQDMVRNGYATQEMREINLFSPRIHNETVNVETRHMDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSALSDFTFCPLQQERDANEDGGRQVGETGTRVSPSDRNALNFHTTSGYPLHNMSSSPFSTQDYEVEASRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRTSSRDNNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKLYTKSHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICISDSLPTEN 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00827 559 MobiDBLite consensus disorder prediction 308 331 - -
Car08g00827 559 ProSiteProfiles Zinc finger RING-type profile. 504 546 IPR001841 -
Car08g00827 559 SUPERFAMILY RING/U-box 484 552 - -
Car08g00827 559 MobiDBLite consensus disorder prediction 73 87 - -
Car08g00827 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 550 IPR013083 -
Car08g00827 559 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Car08g00827 559 SMART ring_2 504 545 IPR001841 -
Car08g00827 559 Pfam Ring finger domain 503 546 IPR001841 -
Car08g00827 559 MobiDBLite consensus disorder prediction 1 22 - -
Car08g00827 559 MobiDBLite consensus disorder prediction 100 125 - -
Car08g00827 559 CDD RING-H2_PA-TM-RING 503 546 - -
Car08g00827 559 MobiDBLite consensus disorder prediction 58 72 - -
Car08g00827 559 MobiDBLite consensus disorder prediction 1 125 - -
Car08g00827 559 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 559 - -
Car08g00827 559 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00827 Car-Chr8 7418299 7422585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00827 219 553 C3H Transcription Factor Family AT5G45290 59.366 1.28e-116 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00827 - - gmx:100786091 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00827 08 7418299 7422585 Car07g01740 07 17970661 17974415 PCT