Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00781 ATGAGTGATACAAAAGAAAACGAGGAAGCTTGCGAGGGCGTTCCCGCGGCTGTGGATAGCCAAGTTATTGATGAAAGTTCAAACCAAGCTTCAACTAGTCCACAATTAAGAGATGGCCATCATATGATTATTGACCATCTTGCCGTCATTGAACCATACCTTGATCAAGAGATGAATCTTGAAGCTCAACCTGTTACTGCAGAGGAAACTTCAAAGAATGTTGAAAATGTGTTAAATGATGTTAAAATTGGGAAGGCAGAGCTACCTGCTGAGGATGGAGATGTGAAACCCAAGGTTGTTTCAGAAGACATTCCACAAGAGAATGTTCAAGATACCCTTCACTCGGTCCCGGTTGAGGCTGTTGCTGAGATTTTGAACACAACCAAGTGTGAGGTTGCTTCTGATGCGAAGGTGGAAGCAAAAAAACTTCCTCAGAGTAATAatggagttgatgatgatgtttgtcaaaatagtgttgttggtgatggtgatgctgaGACAACTGTGGTGGAGGTGGATGTGAAGCCTGAAGTTTGTGAAGCAGCTGATAATAAAAGTTGTGATAATAAACCTATATCACCAAGTCATAACAATCCTACTACATCACAACCTGCCGCTTCTGATATAAATGAACCTATATTGTCAAGTCATAATGATTCTACTACACCACAATCTACCCCTGCAGATACAAGGCCAGAAATAAAGAATGTATTAGAAGTTGAAAGTAAGGCTGAGGAAATGCAAGCTGCTGAGCCAGAAGATAATGGGAACTCAGATTCGCTGAACATGTTTTTCTTGGATGCTGATCATTATTATGATGGTAATGAGTCAGGGACGGAAGAGGACCAATCAGCCTTTATGAAGGAGCTTGAAAGCTTCTTTAGAGAGAGGAGCATGGAATTCAAACCTCCCAAATTTTATGGAGAAGGACTTAATTGCCTTAAGTTATGGAGAGCTGTAATGAGATTGGGAGGCTATGATAAGGTAACCTCATGTAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCATAACATAAAAGGTGGCGAGCTGAATGTGCCTATCGCTTCTCCTCCAGAGCCCGTGAGTGTTGAAAATCAGGCTTCAGTATCAGGTAGAGCCCGAAGATATGCTGCTGAACAGGCTATGCGGGGTTGGCACTCACAACGTCTTCTTGGCAACGGTGAAGTTAGTGACCCTATTATAAAGGATAGGAATTCCGTGGCTGTGCAAAAGCGTGAAAAGCAGCTTAAGAGCATCAATTTACTTAAACGTAAGAAACCGTCTTATATGGATAATGCAGTCAAAGCAGCACGCAGCAAACCATCTAAACCACAGTTGGATACAGCCGTGGTTGATATTGGACCTCCTGCTGATTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTCGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTCCGTGTTCAATCAGACCCAGCAGGACGTTTGGTGATAAGTGGTGAGCCAGAGCATCTCAATAATCCTTGGGGTGTGACACCTTTCAAAAAGGTTGTAAGTTTGCCTTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACACTCCATGGACAATTGTTTGTTCGTGTCCCATTTGAACAGTCAGAGTAG 1725 0.4168 MSDTKENEEACEGVPAAVDSQVIDESSNQASTSPQLRDGHHMIIDHLAVIEPYLDQEMNLEAQPVTAEETSKNVENVLNDVKIGKAELPAEDGDVKPKVVSEDIPQENVQDTLHSVPVEAVAEILNTTKCEVASDAKVEAKKLPQSNNGVDDDVCQNSVVGDGDAETTVVEVDVKPEVCEAADNKSCDNKPISPSHNNPTTSQPAASDINEPILSSHNDSTTPQSTPADTRPEIKNVLEVESKAEEMQAAEPEDNGNSDSLNMFFLDADHYYDGNESGTEEDQSAFMKELESFFRERSMEFKPPKFYGEGLNCLKLWRAVMRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIASPPEPVSVENQASVSGRARRYAAEQAMRGWHSQRLLGNGEVSDPIIKDRNSVAVQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVVDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHLNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00781 574 SUPERFAMILY HSP20-like chaperones 483 570 IPR008978 -
Car08g00781 574 CDD ARID 282 367 - -
Car08g00781 574 Pfam Hsp20/alpha crystallin family 491 573 IPR002068 -
Car08g00781 574 SMART bright_3 281 372 IPR001606 GO:0003677
Car08g00781 574 MobiDBLite consensus disorder prediction 21 36 - -
Car08g00781 574 MobiDBLite consensus disorder prediction 1 38 - -
Car08g00781 574 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 65 573 IPR045147 GO:0006357
Car08g00781 574 MobiDBLite consensus disorder prediction 184 233 - -
Car08g00781 574 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 474 574 IPR002068 -
Car08g00781 574 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 65 573 - -
Car08g00781 574 ProSiteProfiles ARID domain profile. 280 371 IPR001606 GO:0003677
Car08g00781 574 CDD ACD_sHsps_p23-like 493 569 - -
Car08g00781 574 Pfam ARID/BRIGHT DNA binding domain 283 367 IPR001606 GO:0003677
Car08g00781 574 SUPERFAMILY ARID-like 273 381 IPR036431 GO:0003677
Car08g00781 574 Gene3D - 280 377 IPR036431 GO:0003677
Car08g00781 574 Gene3D - 474 574 IPR008978 -
Car08g00781 574 MobiDBLite consensus disorder prediction 188 231 - -
Car08g00781 574 SMART ARID_2 277 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00781 Car-Chr8 6935257 6941508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00781 275 572 ARID Transcription Factor Family AT1G76510 63.366 9.01e-132 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Car08g00781 HSP20 3.6e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00781 - - cam:101506818 1157.51