Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00761 ATGGTTAAAATTTGGCTATTGGCTCTAATGATTCTCTACAATGGTTTCTCTTCAACTGAGGCTGGCATCCATAATTCAACAAGGCCTGCTGTTGTAAATATTGGTGCTCTCTTCTCTTTCAATACTAGTGTTGGTAGGATTATAAAAATCGCTATAGAAGCTGCGGTTAAAGATGTAAATTCGGATCCAAACATTCTTGGTGAGACCAAGTTGAAGCTCTCTCTTCAAGAAGATTCTAAATATAGAGGTTTTCTAAGCATTGCTGAGGTTTTGCAGGTTATGTCTAGTGACACTGTGGCAATTATTGGCCCCCATAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTTCAAGTTCCTCTTCTGTCATTTTCAGCTTTAGACCCAACCCTTTCTTCACTTCAATTCCCATTTTTTATCAGAACATGTCACAGTGATCTTTTTCAAATGGCTGCAATAGCAGACCTTGTTGACTACTATGGATGGAAAGAAGTCATTGCTGTGTATATTGATGATGATAATGGGAGGAACGGAATTACTGCATTAAGCGATAAGCTTGCCAAGAGACGTTGCAGGATATCATTTAAAGCGCCTGTGAGTCCCGAAGCAACTACGGAGGAGATAACAAATGTGCTTGTTCAGGTGGCTCTAGCTGAATCAAGAGTTATAGTTGTTCATGCCAACACTCTTTGGGGCCCGAAAGTGTTCAGTGTTGCAAAGAATCTTGGAATGATGACAACTGGTTATGTATGGATAGCCACTGCTTTTCTTTCTGCTATTCTTGATATAAGTAGTCCTTTATCTTCTGATTCAATGGATGCAATCCAAGGAGTATTGACGCCACGAGTTTACATTCCAGATTCGGAGCTCAAAAGAAGGTTTGTTTCTAGATGGAAAAACTTGACTTATGGAAACACTGCTAATGGCCCACTTGGACTTAGTTTTTTGTCTTTCTATGCATATGATACTGTTTATGCTCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGGAACCAAATCACCTTCTCAAATGATCCAAAGTTATCCGTACTAAAAGGTGACAACTTGCATCTTGATGCATTGAACATTTTCGACCAAGGGAATTCGTTACTTCGAAACATTTATGAAGTTAACATGACAGGTGTGACAGGTTTGTTCAAGTATGCACCTGATAAAAACCTTGTTAATCCTGCCTATGAAATCATCAATGTGATTGGAACCGGGTCTCGGAGGATTGGTTATTGGTCTAATCACTCTGGATTATCAGTTGTTTCTCCAGAAGCCAATGATTCCAGGGAAAGTCAGAAACTATTCCCTGTGATTTGGCCTGGAGACACAGTCCAGAAGCCGCGTGGTTGGGTTTTTCCAAACAATGGAAGGCTGTTAAGAATTGGAGTCCCAATAGGTGTTTCTTACCGCGAATTTGTCTGGCAAGTACCAGGCACCAATACATTTCAAGGATTCTGCATTGATGTATTTCTTTCTGCAGTTAACCTGTTGCCTTATGCTGTTCCATATAAGTTTATCCCATACGGGGATGGTATAAACAATCCCAGTAACACCGAGCTTCTCCGTTCGATCACGGCCGGTGAATTTGATGGTGCGGTAGGTGACATTGCAATTACTACAACAAGAACAAAGTTGGTTGATTTTACTCAGCCATATGTTGAGTCTGGTTTAGTGGTAGTAGCACCAGTTGGGAAGACAGAAACTAGTGCTTTGGCCTTTTTGGCACCATTTACACCAAGGATGTGGTTTGTCACAGCTGTCTTTTTCATAATAGTGGGAACTGTAGTTTGGATTTTGGAGCATAGAGTGAATGATGAATTTAGAGGACCACCCAAAAAACAAGTGGTTACTATTCTTTGGTTTAGCTTTTCAACAATGTTCTTTTCCCACAGGGAAAACACAGTGAGTACACTTGGTCGTTGTGTGCTGCTTATATGGTTATTTGTAGTTCTTATAATTACATCAAGCTACACTGCAAGTTTAACATCAATCCTCACAGTACAGCAACTTTCTTCACCCATTAAAGGCATTGAAAGTTTAGTAATTAGCAAAGAACCAATTGGTTACACTCAAGGTTCTTTTTCTAGAAGTTACTTAATCCAAGAAATTGGTATTGATGAGTCTAGGCTTGTTCCTTTAAAAACAGCAGAAGAAGCTGCTAGAGCACTTGAAAAGGGTCCCCACAATGGTGGTGTTGCAGCCTATGTCGAAGAACGTGCCTATATCGAGATCTTCCTTTCAAGCCGGTGTGAATTTACTGTTGTAGGTCAAGCGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCAAGAGACTCCCCACTAGCAGTTGACCTGTCAACTGCAATTTTGCAAATGGTAGACAATGGAGACTTACAAAGGATTCATGACAAATGGCTTTTGAGTAGAGCTTGTTTATCACAAGGTGCAAAGTTAGAAGTTGAAAAACTCAAACTAAAAAGCTTTTGGGGCCTCTATGCAATATGTGGATCAGCTTGTTTGCTTGCTCTATTCATATTTCTAATACAGATAATTAGACAGTACAACAAGAACCACTCAGAGGAACTTGATTCTACTGACCAAAACTCGGGATCTTCATGTTTGAGGAGGTTCTTCGCATTTGTAGATAAAAAAGAAGAGACTCTTCAGAATCGTTTGAAGAGAAGGAAAATGGAGAGAATATCATATAGAAGTAGTGAAGGAGGATCATCCTCCATCATCTTCAATAAAGAATATGTTGTTCAGCCATCTTCATGCACAACTGGTTCTGTGTCTAATGGTGGAAGTGAACAAGTATCTATCAAAGTGGTGTAA 2832 0.399 MVKIWLLALMILYNGFSSTEAGIHNSTRPAVVNIGALFSFNTSVGRIIKIAIEAAVKDVNSDPNILGETKLKLSLQEDSKYRGFLSIAEVLQVMSSDTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLFQMAAIADLVDYYGWKEVIAVYIDDDNGRNGITALSDKLAKRRCRISFKAPVSPEATTEEITNVLVQVALAESRVIVVHANTLWGPKVFSVAKNLGMMTTGYVWIATAFLSAILDISSPLSSDSMDAIQGVLTPRVYIPDSELKRRFVSRWKNLTYGNTANGPLGLSFLSFYAYDTVYALAHALDAFFKQGNQITFSNDPKLSVLKGDNLHLDALNIFDQGNSLLRNIYEVNMTGVTGLFKYAPDKNLVNPAYEIINVIGTGSRRIGYWSNHSGLSVVSPEANDSRESQKLFPVIWPGDTVQKPRGWVFPNNGRLLRIGVPIGVSYREFVWQVPGTNTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGINNPSNTELLRSITAGEFDGAVGDIAITTTRTKLVDFTQPYVESGLVVVAPVGKTETSALAFLAPFTPRMWFVTAVFFIIVGTVVWILEHRVNDEFRGPPKKQVVTILWFSFSTMFFSHRENTVSTLGRCVLLIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIESLVISKEPIGYTQGSFSRSYLIQEIGIDESRLVPLKTAEEAARALEKGPHNGGVAAYVEERAYIEIFLSSRCEFTVVGQAFTRNGWGFAFPRDSPLAVDLSTAILQMVDNGDLQRIHDKWLLSRACLSQGAKLEVEKLKLKSFWGLYAICGSACLLALFIFLIQIIRQYNKNHSEELDSTDQNSGSSCLRRFFAFVDKKEETLQNRLKRRKMERISYRSSEGGSSSIIFNKEYVVQPSSCTTGSVSNGGSEQVSIKVV 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00761 943 Pfam Ligand-gated ion channel 807 838 IPR001320 GO:0015276|GO:0016020
Car08g00761 943 Gene3D - 462 576 - -
Car08g00761 943 Gene3D - 577 703 - -
Car08g00761 943 SUPERFAMILY Periplasmic binding protein-like I 27 458 IPR028082 -
Car08g00761 943 SUPERFAMILY Periplasmic binding protein-like II 442 808 - -
Car08g00761 943 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 917 - -
Car08g00761 943 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Car08g00761 943 PANTHER GLUTAMATE RECEPTOR 3.6 14 917 - -
Car08g00761 943 Gene3D - 721 775 - -
Car08g00761 943 SMART GluR_14 467 808 IPR001320 GO:0015276|GO:0016020
Car08g00761 943 PIRSF IGluLR_plant 1 936 IPR017103 -
Car08g00761 943 Gene3D - 50 400 - -
Car08g00761 943 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Car08g00761 943 Gene3D - 148 425 - -
Car08g00761 943 Pfam Bacterial extracellular solute-binding proteins, family 3 479 806 IPR001638 -
Car08g00761 943 Gene3D - 776 806 - -
Car08g00761 943 CDD GluR_Plant 466 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00761 Car-Chr8 6692071 6697707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00761 5 905 Ion Channels AT3G51480 57.947 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00761 K05387 - gmx:100793320 1429.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00761 08 6692071 6697707 Car07g01691 07 17234595 17240405 PCT