Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00750 ATGCCTAAGGCTACCACTAAAGCCAAACCCGCCGCCGATAACCGGTTGAAGCGCAAGGGCGCTGGAACCGGTAAGAAGCAGTCGAAGAAAGCTTCGAAAGATCCTAACAAGCCGAAGAGACCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAATTCAGAGAGACTTTTAAGAAGGAGAATCCTGATAACAAATCCGTTGCTGTGgtcggtaaagctggcggtaaagaatggaaatcgatgtctgatgctGATAAGGCTCCTTTTGTTGCTTTGGCAGTAAAGAAGAAAGAGGAGTATGAGAAGACTCTTCGTGCTTACAATATTGGATTGACTGAGGCAAAAAATCCTTCGGAGGAAGAAGGATCTGACAAGTCAAAGTCtgaaatcaatgatgacgatgaagatgatGATGAAGATGATGATGAGTAA 429 0.3706 MPKATTKAKPAADNRLKRKGAGTGKKQSKKASKDPNKPKRPPSAFFVFMSEFRETFKKENPDNKSVAVVGKAGGKEWKSMSDADKAPFVALAVKKKEEYEKTLRAYNIGLTEAKNPSEEEGSDKSKSEINDDDEDDDEDDDE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00750 142 SMART hmgende2 37 108 IPR009071 -
Car08g00750 142 CDD HMGB-UBF_HMG-box 38 104 - -
Car08g00750 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 7 140 IPR031061 -
Car08g00750 142 SUPERFAMILY HMG-box 25 108 IPR036910 -
Car08g00750 142 Pfam HMG (high mobility group) box 38 107 IPR009071 -
Car08g00750 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 7 140 - -
Car08g00750 142 MobiDBLite consensus disorder prediction 1 43 - -
Car08g00750 142 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Car08g00750 142 MobiDBLite consensus disorder prediction 106 142 - -
Car08g00750 142 Gene3D High mobility group box domain 22 126 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00750 Car-Chr8 6613805 6615102 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Car08g00750 HMG_box 1.2e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00750 K25507 K22507 gmx:100499992 184.496