Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00744 ATGGGTCTCTGCTTCTCTCACCAACAATCTCCCTCTTCCCTCAATTTTCCTCACACTTCAGGTTCAACGATTAATAATTGCAATACTAAAAACGTATCATCATCAGCATCATGTAGTAATAGTAAAGTTTTTGAGATAGGAAGTGAAAGTGTTGGTAATGGAGGAGAAGGAAGCATAGTAATAAGTGGGAAGTTTATGCAAACACCAAACTTAAAGGTGTTTAGTTATGGAGATTTGAAAGCTGCTACAAAGAGTTTTAAATCTGATGCATTGCTTGGTGAAGGTGGTTTTGGTAAAGTGTACAAAGGTTGGTTGAATGCTGAGACACTCGCCCCTGTTAAAGCTGGTTCTGGAATGATGGTGGCAATTAAGAAATTGAAACCTGATAGTGTTCAAGGTGTTGAAGAATGGCAGTCAGAAATCAACTTTTTAGGAAGGATTTCTCACCCCAATTTGGTGAAGCTACTTGGTTACTGTAAGGACAATAATAAATTTCTTCTTGTGTACGAGTTCATGCCAAGGGGAAACTTGGAGACCCATCTCTTTAGAAGAAATACTGACATAGAACCACTTTCttggaacacacgactcaaaatagctattgatgcagctagaggcttagctttcttgcactcctcagagaagcaagtcatatacagagatttcaaggcttccaatatacttcttgatgGGAATTACAATGCAAAGATTTCAGATTTTGGGTTGGCTAAACTTGGGCCATCTGAGGGAGATTCACATGTGACTACTAGGATCATGGGCACATATGGTTATGCTGCCCCAGAATACATTGCAACAGGACATTTGTATGTGAAGAGTGATGTTTATGGCTTTGGTGTAGTGCTTCTTGAAATGCTAACAGGGTTGCATGCACTTGATACAAAGAGACCAACAGGGCAACAGAATCTAGTTGAATGGATTAAGCCTTCACTCTCTGATAAAAGAAAATTGAAAAGTAACATTGTTGATTACAGATTAGAGGGCCAATATTCACCAAAAGCAGCATTTGAAACAGCAAAGCTTATTCTTAAATGCCTTGAATCTGACCCTAAAAAACGTCCTTCTATGAAAGAAGTTTTTGAGACATTGAAAAGCATAAAAGCTATAAAGGATAAAAGGAAAATATCGAAGAATCATCGTACTAAGTCTGCAGCTATGTACAATTTACAAAAGCCAATTTGTCCATTTAGGGTGAGCATTTGA 1221 0.3432 MGLCFSHQQSPSSLNFPHTSGSTINNCNTKNVSSSASCSNSKVFEIGSESVGNGGEGSIVISGKFMQTPNLKVFSYGDLKAATKSFKSDALLGEGGFGKVYKGWLNAETLAPVKAGSGMMVAIKKLKPDSVQGVEEWQSEINFLGRISHPNLVKLLGYCKDNNKFLLVYEFMPRGNLETHLFRRNTDIEPLSWNTRLKIAIDAARGLAFLHSSEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPSEGDSHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLHALDTKRPTGQQNLVEWIKPSLSDKRKLKSNIVDYRLEGQYSPKAAFETAKLILKCLESDPKKRPSMKEVFETLKSIKAIKDKRKISKNHRTKSAAMYNLQKPICPFRVSI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00744 406 SUPERFAMILY Protein kinase-like (PK-like) 70 373 IPR011009 -
Car08g00744 406 Pfam Protein tyrosine and serine/threonine kinase 89 369 IPR001245 GO:0004672|GO:0006468
Car08g00744 406 CDD STKc_IRAK 92 372 - -
Car08g00744 406 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 39 384 - -
Car08g00744 406 Gene3D Transferase(Phosphotransferase) domain 1 172 397 - -
Car08g00744 406 PANTHER OS01G0588500 PROTEIN-RELATED 39 384 - -
Car08g00744 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Car08g00744 406 ProSitePatterns Protein kinases ATP-binding region signature. 92 125 IPR017441 GO:0005524
Car08g00744 406 Gene3D Phosphorylase Kinase; domain 1 61 171 - -
Car08g00744 406 ProSiteProfiles Protein kinase domain profile. 86 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00744 Car-Chr8 6561226 6563701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00744 63 375 Receptor kinase-like Gene Family AT4G02010 48.734 7.43e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Car08g00744 PK_Tyr_Ser-Thr 9.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00744 - - gmx:100794193 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00744 08 6561226 6563701 Car07g01679 07 17095027 17099949 PCT