Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00738 ATGGGAGGTGACGCAACCGCTGAAACTGCGACGGAGCCAAAAACCACCGAAGGAGTTAAGATCAACATTCGCTGTTCCAATGGCTCCAAGTTTTCCGTTCAGATTAGCCTCGATTCCACCGTTGGATCCTTTAAGGACGCTGTCGCTCAGAATTGCGATATCTCCGCTGAACAACAGCGTCTGATTTATAAAGGTCGGATCCTCAAGGACGATCAAACCTTGCAAAGCTACGGTTTGGAGGCAGATCACACTGTTCATTTGGTTCGTGGTTTTACACCTGCCAATACAACTGGTGGGACTAATACCAGTGGTGGTGCGAATACCACAACTACAAATGCTAGAGGTGCTGGTGCTAATGAGGGTGGAGGATTAGGAGGACCTGGACTTGGAGCTTCACTGTTTCCAGGACTAGGTATCAATGGGATGGGAGGAGGTGGCCTTGGTGGCTTATTTGGAGCGGGCCCTCCAGATCTTGAACAACTGCAGCAACCACTTTTGTCAAATCCTAATTTAGTGAGAGAAATAATGAACTCACCTGCCATGCAAAATTTATTAAATAATCCTGAGATAGTGCGCAATCTTCTAATGAGCAATCCACAGATGCAAGAACTCATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCCAGCACACTTCGCCAGACACTTGAGGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGGAACACAGACAGAGCTATGAGCAACATTGAATCATCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAGGAACCATTTTTAAATGCCACCACAATGGCTGGTAATGCAGGAAATGAAAGCACCAGAACTTTGGGGACTCAAGGTGGCCAAACGAGGAGTCAATCAACCAATCCCTCAACCACCAATTCTGAAGCAACTTCCCCTGTACCCAATACTAACCCGCTTCCCAATCCTTGGTCATCTGCTGGAACTGGAGGTGCCCAAACTAATGCCAGGAGGCCAGCTGCTGGTGGGGAAGCTCGGCAGCAGACACCCACTGGCTTAGGCGGGCTTGGTATGCCAGATCTTGAAGGCATGTTGGGTGGTATGCCAGATCCTGCTTCATTGACCCAATTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAAACAATGAATCAGATTCTTGGTATGAATACTGATCAGCGTGGGATGCCTGATCTAAATTCAATGAGAGAAGTGATGCAAAACCCCGAGTTTCTTCGCATGTTTTCCTCACCTGAGACAATGCAGCAACTCTTGTCTATGCAGCAAGCTCTTATGTCTCAGCTTGGTCAGCAGCAATCAACACAGGAACCAGGCCAAGCAGGTGGAGGCACTGGATCAGTTAACAACTTGGGGCTGGAGATGTTATCAAGTATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTAATCCAAACAGATCAAATGAGCCACCAGAGCAACTGTATGCCACCCAACTTTCCCAGCTTCAAGAGATGGGATTCTTTGACACGCAAGAGAACATAAGGGCTCTTATTGCAACATCAGGGAATGTTCATGCAGCGGTTGAGCGACTTTTGGGAAATTCTGGACAGTAG 1629 0.4721 MGGDATAETATEPKTTEGVKINIRCSNGSKFSVQISLDSTVGSFKDAVAQNCDISAEQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFTPANTTGGTNTSGGANTTTTNARGAGANEGGGLGGPGLGASLFPGLGINGMGGGGLGGLFGAGPPDLEQLQQPLLSNPNLVREIMNSPAMQNLLNNPEIVRNLLMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNESTRTLGTQGGQTRSQSTNPSTTNSEATSPVPNTNPLPNPWSSAGTGGAQTNARRPAAGGEARQQTPTGLGGLGMPDLEGMLGGMPDPASLTQLMQNPAISQMMQSILSNPQTMNQILGMNTDQRGMPDLNSMREVMQNPEFLRMFSSPETMQQLLSMQQALMSQLGQQQSTQEPGQAGGGTGSVNNLGLEMLSSMFGGLGAGSLANPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00738 542 SUPERFAMILY UBA-like 496 538 IPR009060 GO:0005515
Car08g00738 542 Gene3D - 482 542 - -
Car08g00738 542 SMART CBM 356 398 IPR006636 -
Car08g00738 542 SMART CBM 401 436 IPR006636 -
Car08g00738 542 SMART CBM 144 185 IPR006636 -
Car08g00738 542 SMART CBM 198 237 IPR006636 -
Car08g00738 542 MobiDBLite consensus disorder prediction 444 466 - -
Car08g00738 542 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Car08g00738 542 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 4 542 - -
Car08g00738 542 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Car08g00738 542 CDD Ubl_Dsk2p_like 19 91 - -
Car08g00738 542 SMART ubq_7 19 90 IPR000626 GO:0005515
Car08g00738 542 MobiDBLite consensus disorder prediction 275 331 - -
Car08g00738 542 Pfam UBA/TS-N domain 500 536 IPR015940 -
Car08g00738 542 SUPERFAMILY Ubiquitin-like 16 102 IPR029071 -
Car08g00738 542 Gene3D - 6 103 - -
Car08g00738 542 SMART uba_6 500 538 IPR015940 -
Car08g00738 542 MobiDBLite consensus disorder prediction 93 116 - -
Car08g00738 542 CDD UBA_PLICs 500 538 - -
Car08g00738 542 PANTHER UBIQUILIN 4 542 - -
Car08g00738 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 539 IPR015940 -
Car08g00738 542 Gene3D - 193 251 - -
Car08g00738 542 MobiDBLite consensus disorder prediction 93 121 - -
Car08g00738 542 MobiDBLite consensus disorder prediction 275 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00738 Car-Chr8 6504873 6510755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00738 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 2.49e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00738 K04523 - gmx:100797539 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00738 08 6504873 6510755 Car07g01673 07 16997952 17003874 PCT