Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00717 ATGAAAGCAATGATAGCAACGTCGTTTAATGTCTACGCCACTTGCTTCCATTCATGCCCTCTAAATCTACGGCAGAACAGGAACATAACCAGCTTTTCGTTTAACAAGGGACACAGAAGCGTTGTTGTTCAACCAAAGTTTCCAAATTTCCACAGGGTGTGTGGTATAAAGGGGAATATGGAGGTTGTTGGAATTCCAACTTCGGTGCCAGTGCGTGTAGCACACGAACTTCGTCTCGCTGGTCATAAGTATTTGGATGTAAGGACGCCTGAAGAATTTAATGCTGGGCACGCTCCTGGTGCAATTAACATACCTTATATGTACAGAGTCGGATCAGGGATGACAAAGAACAGCAACTTTGTGAAAGAGGTCTCCTCAAATTTTAGAAAAGAGGATGAAATTCTTGTAGGTTGTCAACTAGGTAAAAGGTCTATGATGGCGGCTACCGACTTGTTAGCTGCTGGATTCACTGGACTCACAGACATAGCTGGTGGTTATGCTGCTTGGACCCAAAATGAACTTCCTACAGAACAATGA 537 0.4376 MKAMIATSFNVYATCFHSCPLNLRQNRNITSFSFNKGHRSVVVQPKFPNFHRVCGIKGNMEVVGIPTSVPVRVAHELRLAGHKYLDVRTPEEFNAGHAPGAINIPYMYRVGSGMTKNSNFVKEVSSNFRKEDEILVGCQLGKRSMMAATDLLAAGFTGLTDIAGGYAAWTQNELPTEQ 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00717 178 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 64 177 IPR036873 -
Car08g00717 178 SMART rhod_4 68 175 IPR001763 -
Car08g00717 178 Gene3D - 58 177 IPR036873 -
Car08g00717 178 Pfam Rhodanese-like domain 83 171 IPR001763 -
Car08g00717 178 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 15, CHLOROPLASTIC 1 178 - -
Car08g00717 178 CDD RHOD 85 169 - -
Car08g00717 178 ProSiteProfiles Rhodanese domain profile. 78 178 IPR001763 -
Car08g00717 178 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 15, CHLOROPLASTIC 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00717 Car-Chr8 6270070 6272883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00717 68 175 Sulfurtransferasese or Rhodanese AT5G66170 47.273 6.17e-31 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00717 - - aprc:113868825 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00717 08 6270070 6272883 Car07g01617 07 16271143 16273741 PCT