Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00713 ATGtcggattctccagtaagaagGTATTCAAGGTCTCCTTCCCCATGGAGGGCTCAGtcaagatccaggtctaggtctccggcaagatcaagatccaggtctagatctccgtcaagatcCCTTGAAAGGGAAATGCCTAGGTCTCAGTCAAGATCCCTTGAAAGGGAGAGGCCTAGGTCGATGTCAAGATCGCTTGAAAGGGAGAGGCCTAGATCTCGGTCAAGATCCCTTGAAAGGAAGGTGCCTAGCTCTCCGTCAAGATCTCTAGAAAGACAAATTCCTAGGTCTCGGTCAAGGTCTCTTGAAAAGCAAAGGCCTAGGTCCCGATCAAGATCTCTTGAAAGGCAAAGGCCTAGATCCCCCTCGAGAAGTCGTGGCAGATCAAGAACAAGAAGTCCTGATAGGAATGCTGGGGATACACTCTATGTGACTGGCCTATCTTCAAGAGTCACTGAGAAAGACCTGGAGGAGCATTTCTCTACAGAAGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCCCGTACGCGTATTTCTCGTGGTTTTGGGTTTGTTACTATGGAATCTGTTGAGGATGCAAGCCGCTGTGTCAAGTACCTCAATCAATCTGTTTTAGAGGGTCGCTATATCACTGTAGAGCGGGTAATGTGTTTTTTGATTAACTGGTAG 669 0.4185 MSDSPVRRYSRSPSPWRAQSRSRSRSPARSRSRSRSPSRSLEREMPRSQSRSLERERPRSMSRSLERERPRSRSRSLERKVPSSPSRSLERQIPRSRSRSLEKQRPRSRSRSLERQRPRSPSRSRGRSRTRSPDRNAGDTLYVTGLSSRVTEKDLEEHFSTEGKVASCFLVVEPRTRISRGFGFVTMESVEDASRCVKYLNQSVLEGRYITVERVMCFLINW 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00713 222 MobiDBLite consensus disorder prediction 35 80 - -
Car08g00713 222 MobiDBLite consensus disorder prediction 92 134 - -
Car08g00713 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Car08g00713 222 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 83 215 - -
Car08g00713 222 SUPERFAMILY RNA-binding domain, RBD 116 214 IPR035979 GO:0003676
Car08g00713 222 MobiDBLite consensus disorder prediction 1 140 - -
Car08g00713 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 210 IPR000504 GO:0003723
Car08g00713 222 Gene3D - 86 213 IPR012677 -
Car08g00713 222 PANTHER OS06G0724600 PROTEIN 83 215 - -
Car08g00713 222 MobiDBLite consensus disorder prediction 1 23 - -
Car08g00713 222 SMART rrm1_1 140 213 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00713 Car-Chr8 6209176 6212089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00713 135 213 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 4.17e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00713 K12897 - gmx:100527350 171.4