Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00703 ATGGATTTTGTGTCAAATCCATGTCCTTTGCGTTCATCTTTGTTCGGTTCTTTAGGGAATTTTATTGACAAGGTTAAACAATTTGGCACCCTCGCTGTTTCTGCTGTCATTGGGAACATTTTTTCTGCGATCTTGACTTTTTGCTTTGCATTAGTGGGGACTTTGTTGGGAGCTATGACAGGAGCTTTGATAGGCCAAGAGACTGAAAGTGGTTTCATTCGAGGTGCTGCTGTTGGTGCTATTTCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTTTGGCATTCTGATGAATCTGGGATTGGTTGTCTTTTATACTTGATTGATGTTATTGCTAGCTTGTTGAGTGGTAGACTTGTGCGTGAGAGAATAGGTCCAGCCATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAACAAGCTTTGATGAAGTTCAAAACATCTTTGACATTGGTGGTTCAAAAGGGTTATCCGGAGATTCGGTTGCGAAAATCCCAAAAATCAAAATCACCTCCGACAACGTCGATGCATCAGGAGATAAAGTTTCTTGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGAGAAACAGTTAGAAGTTTACCTCATTGTCATCACATGTTTCACCTACCTTGCATAGATATGTGGCTCTTGAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 705 0.417 MDFVSNPCPLRSSLFGSLGNFIDKVKQFGTLAVSAVIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDIGGSKGLSGDSVAKIPKIKITSDNVDASGDKVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDMWLLRHGSCPLCRRDL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00703 234 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE, YMGG-LIKE GLY-ZIPPER-RELATED 17 234 - -
Car08g00703 234 SMART ring_2 189 230 IPR001841 -
Car08g00703 234 SUPERFAMILY RING/U-box 188 234 - -
Car08g00703 234 Pfam Ring finger domain 188 231 IPR001841 -
Car08g00703 234 CDD RING-H2_PA-TM-RING 189 231 - -
Car08g00703 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 234 IPR013083 -
Car08g00703 234 ProSiteProfiles Zinc finger RING-type profile. 189 231 IPR001841 -
Car08g00703 234 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 17 234 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00703 Car-Chr8 6131005 6133079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00703 22 234 C3H Transcription Factor Family AT5G66070 77.465 1.59e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00703 - - lja:Lj2g3v1670720.1 414.075