Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00682 ATGGGTAATAAGTGCATATACATGTTTAAGAGACTATTCAGGTTTGCCACTTCATTGAAGAAAAGTATCACACCAAAAGGTAGAAGAATTTTGCACAGGGATGTGGAAAAAGAAGAATTTCAATATGCTAGTAGTCATTGTCTTTCATCCTACTACAGTGTGTTTGTGGTTAGATTAGCAATCATGGTAATGCTGGCTATATTGATAGGACTATTGACAATATTAACATGGCATTTCACAAAGATATATACAGCAAAATCACTTAGTAGTTTGGCATATGGTTTGCGTTATGAACTTCTTCAACGTCCAATTTTGAGGATGTGGAACATTTTGAATGCTACTTCTGAAATTACAACTGCTCAAGTCAAGTTGTCTCAGTATGTTATCAGACGTTACAGCAACTCTGCATCTCAAGCAGAGCAAGTTGAGCTGTATGAAGCAATGAGGGCAGTAACATGGGCACTATTTGCTAGTAGAAAAGCTCTAAACTCAATAACAATCAATTACAAGAATGGTTTTGTTCAAGCATTCCATAGAGATCTAAAAGATAACAACACATTTTACATATACTCAGATCTTTCAAACTATTCCATGGTAGCCACAACCTCAAATATTGTCAAACCCCTTTCATCTCATCAATCTTGGGATGATAAATCTCTTCATGGTAATTTTTCAGCAATTTGGTATAGAGAGCCACTTGATCCAGTCACAGGTGAAAAAATTGGAAAAGCAATGAAAATTGCACCTGAAGATTTGATAAACATAGCAGGACTTTCTCAAGTTCCTGATGGTTTAGCTACATGGCATGTTGCTGTTAGTAAATTTACAGATTCACCCTTGCTTTCAGCAGCATTGCCTGTTTGGGATTCTTCTAATAAAAGTATTATGGCAGTTGTTGGTGTGACAACTGCTTTTTATAGTGTTGGACAGTTAATGAGAGAGTTAGTTGAGATGCATAGTGGTCACATGTATTTGACTTCACAAGAAGGTTTTTTACTTGCAACTTCTACTAGTGCACCTTTGCTTACAAATTCAACTAAGCCACCAAAGCTTAAAATGGCTGTGGATTGTGAAGATGGTGTTATAAGACTTGGAGCTGAGTGGTTGCAGAGAACATATGGTAACCATTTGTCTTCAACTCATGAGGTTCATGTTGAGAATGCTAAGCTAGGTCATCAGCAATATTACATTGATACATTTTACCTAAACTTGAAGAGACTTCCTTTGGTAGGTGTAATCATCATACCAAGAAAGTATATAATGGGGCAGGTGGATCAGAGAGCCTTCAAAACTTTGGTTATTCTGATATCTGCATCTTTATGTATTTTTGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTGTCAAAGGAAATGAATCTAAGAGCAGAACTCATAAGTCAGCTTGAAGCAAGAAGGAAAGCTGAGGCATCAAGCAACTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAATTGAGGACACCTATGGCAGCAGTAATTGGATTACTTGACATTCTTATATCTGATGATTGTCTCACAAATGAACAATATTCAACAGTTACTCAAATAAGAAAATGCTCAACTGCTCTACTCCGTCTTCTTAACAACATATTGGATCTAAGCAAGGTGGAGTCAGGAAAACTTGTCCTAGAAGATGCAGAATTTGACTTGGGACGTGAACTTGAAGGACTTGTAGATATGTTTTCTGTTCAGTGCATTAACCATAATGTAGAGACTGTTTTAGACCTTTCTGATGATATGCCAAAAGTAGTTAGGGGTGACTCTGCTAGGGTGGTTCAAGTTTTCGCAAATTTGATCAACAATTCAATTAAGTTTACTACATCTGGTCATGTTATTCTGAGAGGATGGTGTGAAAACCTGAATTCTTGCAATGATAGTCCAAATTTTTATCTTGATCAGAAGAAATCAAGGACTTTACATAAGAGCAAAGAGAAGCCAAATGCAAATCATGCAAAGAGAATATCTATGAGAGATAACAAAATGATACTTTGGTTTGAAGTTGAGGACACAGGCTGTGGTATTGATCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGGACTGGTCTTGGTCTGTGCATTGTTAGGAACTTGGTTAATAAGATGGGCGGAGAAATCAAGATTGTCCAAAAGGAGGGTCAAGGAACATTGATGAGATTATGCTTGCTTCTCAGTGCACCCATGGTTGTCACAGAACAACACTGTGAAGTAAATTTGACAGACAATGGCTTAGTGGTATTGCTTGCACTGCAAGGTAACATGGGTAGATTAATAACATCAAAGTGGTTACAGAAAAAAGGGGTGTGCATAATGGAAGCATCTGAATGGAATGGACTAACTCAAATTTTGAGGGAACTCTTTCATCATGCAAGAAGTTCAATCAATAATAATAACTTTGATGCACACTATCCAATAAATCTTGAAGGATTTAAGTCCAAACTACTCAGCATCAAAGATATGAGAAACCCAATTTTTGTCATTGTTGTTGACATTGGTTTACTTGACTTAAGCACAGATATATGGAAGGAACAGCTTAACTTTCTTCACAAGTATTTTGGTAGAGCAAAATTTGTATGGTTGTTAAATCATGACACATCAAATACTATAAAGATGGAGCTTCGTAGGAAAGGACACATACTAATGATTATTAAACCTCTTTACAAAGCAAAAATGGTTCATATTTTGGAGGCTGTTATAAAAGAGAGAAATCTTGAGCCTCAAAAGAAAAACATGAATGGTCCAAAGGGTGATTTGCATGAGTTTCTTGAGATTGATTCAACTCATTTTGATGCTGCTAGCTCTGATGATTCTGACATATCTGAAAAACCATTTGATTCTAATCCTGTGAATAGTATTAATGGAGAAAAACCATTTGTAAAAGATCATATGAGTAACTGTTTGGCTAGATTAACCAATGAAAATGAACATTTGGAAGAAGAATCATTGTCCACTAAAGAAACAAATTTTACAACAAAGGCTCAAAATGAAGATTCTGAATGTGAGGGGACTTATAGAGTCACTAGGCCAAGTAAAGCAGTAAATGATAAGAAATCTCTTGAGGGTTTAAGGATTTTGCTTGCAGAAGATACACCAGTGATTCAAAGGGTTGCAACAATAATGCTTGAAAAAATGGGAGCTGTTGTTGTTGCTGTAGGTGATGGACAACAAGCAGTAGATGCTCTTAATTACATGGTAAGTGGTGAAGACTGTAGAAGAGAGTCTCTTCTGAAGGAAAGAAATACAAGATCCCAAACTGAGATTTTGAGTTGCCATCCATATGACTTGATCCTTATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACAAAAGCAATAAGGAAATCAGAGGAGGGAACAGGAAAGCACATTCCAATAGTTGCTCTCACAGCTCATGCAATGTCTTGTGATGAAGCCAAATGCCTTAAGGTGGGAATGGATGCTTATTTAACAAAGCCAATTGACTTCAAGAAGATGGTTTCCACCATTCTCTCACTCACTAAATCAACAACTTGA 3585 0.3671 MGNKCIYMFKRLFRFATSLKKSITPKGRRILHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLSSLAYGLRYELLQRPILRMWNILNATSEITTAQVKLSQYVIRRYSNSASQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMVATTSNIVKPLSSHQSWDDKSLHGNFSAIWYREPLDPVTGEKIGKAMKIAPEDLINIAGLSQVPDGLATWHVAVSKFTDSPLLSAALPVWDSSNKSIMAVVGVTTAFYSVGQLMRELVEMHSGHMYLTSQEGFLLATSTSAPLLTNSTKPPKLKMAVDCEDGVIRLGAEWLQRTYGNHLSSTHEVHVENAKLGHQQYYIDTFYLNLKRLPLVGVIIIPRKYIMGQVDQRAFKTLVILISASLCIFVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQVFANLINNSIKFTTSGHVILRGWCENLNSCNDSPNFYLDQKKSRTLHKSKEKPNANHAKRISMRDNKMILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKIVQKEGQGTLMRLCLLLSAPMVVTEQHCEVNLTDNGLVVLLALQGNMGRLITSKWLQKKGVCIMEASEWNGLTQILRELFHHARSSINNNNFDAHYPINLEGFKSKLLSIKDMRNPIFVIVVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWLLNHDTSNTIKMELRRKGHILMIIKPLYKAKMVHILEAVIKERNLEPQKKNMNGPKGDLHEFLEIDSTHFDAASSDDSDISEKPFDSNPVNSINGEKPFVKDHMSNCLARLTNENEHLEEESLSTKETNFTTKAQNEDSECEGTYRVTRPSKAVNDKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDALNYMVSGEDCRRESLLKERNTRSQTEILSCHPYDLILMDCQMPKMDGYEATKAIRKSEEGTGKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKKMVSTILSLTKSTT 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00682 1194 SMART REC_2 1044 1186 IPR001789 GO:0000160
Car08g00682 1194 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Car08g00682 1194 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Car08g00682 1194 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1191 - -
Car08g00682 1194 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Car08g00682 1194 Coils Coil 982 1009 - -
Car08g00682 1194 SMART HKATPase_4 596 748 IPR003594 -
Car08g00682 1194 Gene3D - 1026 1192 - -
Car08g00682 1194 MobiDBLite consensus disorder prediction 954 977 - -
Car08g00682 1194 Gene3D - 551 748 IPR036890 -
Car08g00682 1194 SUPERFAMILY CheY-like 1042 1190 IPR011006 -
Car08g00682 1194 CDD REC_hyHK_CKI1_RcsC-like 1046 1186 - -
Car08g00682 1194 ProSiteProfiles Response regulatory domain profile. 1045 1190 IPR001789 GO:0000160
Car08g00682 1194 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Car08g00682 1194 Gene3D - 471 550 - -
Car08g00682 1194 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 471 550 IPR036097 GO:0000155|GO:0007165
Car08g00682 1194 Pfam Response regulator receiver domain 1105 1186 IPR001789 GO:0000160
Car08g00682 1194 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1191 - -
Car08g00682 1194 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 746 IPR003594 -
Car08g00682 1194 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Car08g00682 1194 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Car08g00682 1194 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Car08g00682 1194 PRINTS Bacterial sensor protein C-terminal signature 732 745 IPR004358 GO:0016310|GO:0016772
Car08g00682 1194 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 744 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00682 Car-Chr8 5943438 5950662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00682 8 1193 Histidine Kinase Gene Family AT2G17820 65.497 0.0 1576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car08g00682 HATPase_c 1.5e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00682 - - gmx:100807543 1943.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00682 08 5943438 5950662 Car07g01621 07 16338656 16345954 PCT