Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00663 ATGGaacaacaacaacaacagacaGGAAATGAAGAGGGGGGTGGGAGTAGTGGAAAAGGGGGGTATATGAGCAGACAAAGTAGTACAAGGTGGACACCAACAACAGATCAGATAAGAATATTGAAGGATCTTTACTACAACAATGGAATTAGATCCCCAAGTGCAGAACAGATTCAGAGGATCTCTGCTAGGCTAAGACAGTACGGTAAGATTGAAGGAAAAAATGTCTTTTATTGGTTTCAAAATCACAAAGCTAGAGAAAGACAGAAGAAAAGGTTCACTTCTGatcataacaataataataataataataatCTTCCCATGCAAAGAAGTGCTACAATTACAAACAATGTTGCTGTTGCTGCTTGGAAACAAATTGAAGAACAACAATCACCCATTATTCAACACAAGTATTCTAATAACATTATTTCATCTACTGGGCTCTCTTCTGCCTCATGTTCTTCTGCTGAAATGGTTACTGTAGGACAGATTGGAAATTATGGATATGGATCTGTGCCTATGGAAAAGAGTTTTAGGGAATGCACAATATCAGCTGGATGTAGCAGTGGACATGTTGGAAGTACCATAAACCATCACTTAGGATGGGTTGGTCATGTTGGTCCATATTCATCAACATATGCTAATTTATTTGAAAAAATAAGACCAGAGGAAGAAATCATGgaagaagaacaagaagaagagaaTGGTTCCCCTGAAATTGAAACACTCCCTTTATTCCCTATGCATGGTGAAGACATTCATGGCTATTGTAACCTCAAATCAAATTCATCTAACTATGGTGCTCCAAGTTGGTATCAAGCTGAAGATGGTTTCATCAATGCTTCTCGTACTACTTCCTTGGAGCTTAGCCTCAACTCCTACACTCGTAGATCACCAGATTATGCTTGA 909 0.363 MEQQQQQTGNEEGGGSSGKGGYMSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDHNNNNNNNNLPMQRSATITNNVAVAAWKQIEEQQSPIIQHKYSNNIISSTGLSSASCSSAEMVTVGQIGNYGYGSVPMEKSFRECTISAGCSSGHVGSTINHHLGWVGHVGPYSSTYANLFEKIRPEEEIMEEEQEEENGSPEIETLPLFPMHGEDIHGYCNLKSNSSNYGAPSWYQAEDGFINASRTTSLELSLNSYTRRSPDYA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00663 302 SUPERFAMILY Homeodomain-like 21 95 IPR009057 -
Car08g00663 302 CDD homeodomain 29 91 IPR001356 GO:0003677
Car08g00663 302 ProSiteProfiles 'Homeobox' domain profile. 24 90 IPR001356 GO:0003677
Car08g00663 302 Pfam Homeodomain 28 89 IPR001356 GO:0003677
Car08g00663 302 Gene3D - 22 89 - -
Car08g00663 302 SMART HOX_1 26 94 IPR001356 GO:0003677
Car08g00663 302 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 295 IPR044555 GO:0003700|GO:0099402
Car08g00663 302 MobiDBLite consensus disorder prediction 90 109 - -
Car08g00663 302 PANTHER PROTEIN WUSCHEL 1 295 - -
Car08g00663 302 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00663 Car-Chr8 5763643 5765419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00663 22 252 Wox Gene Family AT2G17950 40.000 6.48e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Car08g00663 Homeodomain 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00663 - - gmx:100803815 395.586