Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00657 ATGTCTGCTGCCGGAGAAGTTGATGCTCCCGCCGTTGAACAACCGGTGGAGGAGGTGAAAGCGGCGGAGGAACCTAAACCTGTGAAGGAAAAGAAACCAAAAGCTTCAAAAGAGAAGAAGAAACCTAAACAGGCCAAAACAGCTTCACATCCTCCATATTTTCAGatgattAAGGAGGCTTTGTTGGCTCTGAACGAGAAAGGCGGTTCAAGCCCTTACGCTATAGCAAAATACATGGAGGAGAAGCATAAATCAGCGCTACCAGCGAATTTCAAGAAGATGCTGAGTTTGCAGCTTAAGAATCAAGCCGCGAAAGGGAAGCTGGTGAAGATCAAGGCTTCGTATAAACTATCTGAAGCCGCGAAGCCGAAGAAGGAAGTTACGGCTAAGGTTACGAAGGCTAACGCGGCGGAGAAGAAGCAAGAAGGGTCGAAGAGAAAAAGAAACGTAGTTGCGACGAAGAGTGGTAAGAAAAAAGAGGCGGTTAAGAAGGTTGTGAAGAAGAAGAGTAAGAAGGTTACTGGGCCTGCGAAGCCCAAACAGCCCAAGTCCATTAAGTCTCCTTCTAAGAGGGCTAGAAGAGCTACTGCCTGA 594 0.4714 MSAAGEVDAPAVEQPVEEVKAAEEPKPVKEKKPKASKEKKKPKQAKTASHPPYFQMIKEALLALNEKGGSSPYAIAKYMEEKHKSALPANFKKMLSLQLKNQAAKGKLVKIKASYKLSEAAKPKKEVTAKVTKANAAEKKQEGSKRKRNVVATKSGKKKEAVKKVVKKKSKKVTGPAKPKQPKSIKSPSKRARRATA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00657 197 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 49 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car08g00657 197 MobiDBLite consensus disorder prediction 1 52 - -
Car08g00657 197 MobiDBLite consensus disorder prediction 160 176 - -
Car08g00657 197 CDD H15 47 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car08g00657 197 MobiDBLite consensus disorder prediction 17 32 - -
Car08g00657 197 SMART h15plus2 47 114 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car08g00657 197 MobiDBLite consensus disorder prediction 120 159 - -
Car08g00657 197 SUPERFAMILY "Winged helix" DNA-binding domain 46 129 IPR036390 -
Car08g00657 197 PANTHER HISTONE H1 5 196 - -
Car08g00657 197 Pfam linker histone H1 and H5 family 50 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car08g00657 197 Gene3D - 44 129 IPR036388 -
Car08g00657 197 PRINTS Histone H5 signature 36 57 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car08g00657 197 PRINTS Histone H5 signature 63 80 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car08g00657 197 PRINTS Histone H5 signature 171 188 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car08g00657 197 MobiDBLite consensus disorder prediction 120 197 - -
Car08g00657 197 PANTHER HISTONE H1 5 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00657 Car-Chr8 5683481 5684466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00657 46 135 Single Myb Histone (SMH) Gene Family AT1G72740 35.417 9.07e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00657 K11275 - gmx:100500169 193.741