Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00655 ATGGCTGGTTTCAGCGGCGATGAAACTGCTCCCTTCTTCGGCTTCCTCGGCGCCGCGGCTGCCCTAGTTTTCTCATGTATGGGAGCGGCATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTGTTGGTGTTGCATCGATGGGTGTGATGAGACCGGAGTTAGTTATGAAATCGATCGTACCCGTTGTTATGGCTGGTGTGTTGGGTATTTACGGTTTGATTATCGCCGTCATTATCAGCACTGGTATTAATCCAAAGGCTAAATCTTATTATCTCTTTGATGGTTACGCTCATCTTTCTTCTGGTCTCGCTTGTGGTCTCGCTGGTCTCTCTGCTGGCATGGCTATTGGCATTGTTGGTGATGCTGGTGTTAGAGCAAATGCCCAACAACCCAAGCTTTTCGTTGGAATGATTCTAATTCTCATCTTTGCTGAGGCTTTGGCGTTGTATGGTCTCATTGTTGGCATCATCCTCTCTTCCCGTGCCGGCCAATCCAGAGCTGAGTAA 549 0.4262 MAGFSGDETAPFFGFLGAAAALVFSCMGAAYXXXXXXXXXXXXXXXXXXXXXXXGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00655 182 CDD ATP-synt_Vo_c_ATP6C_rpt2 106 173 - -
Car08g00655 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 173 IPR035921 -
Car08g00655 182 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 97 - -
Car08g00655 182 Gene3D - 48 179 IPR035921 -
Car08g00655 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 33 - -
Car08g00655 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 53 182 - -
Car08g00655 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 47 71 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car08g00655 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 73 97 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car08g00655 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 124 150 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car08g00655 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 151 174 IPR000245 GO:0033179|GO:0046961|GO:1902600
Car08g00655 182 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 54 138 IPR011555 GO:0033179|GO:0046961|GO:1902600
Car08g00655 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 33 - -
Car08g00655 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 53 182 - -
Car08g00655 182 Pfam ATP synthase subunit C 114 172 IPR002379 GO:0015078|GO:0033177|GO:1902600
Car08g00655 182 Pfam ATP synthase subunit C 56 93 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00655 Car-Chr8 5646377 5648794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00655 1 182 Primary Pumps ATPases(2) AT2G16510 86.264 4.35e-102 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00655 K02155 - gmx:100777816 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00655 08 5646377 5648794 Car07g01596 07 15977640 15980507 PCT