Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00644 ATGCTTTACCAAACTCCCTATCCTCTTCTCTTTCAATTTCATCCCTTGCCTTCTTCTTCCACCATTCAACAAGTTCCTCTCCCACAGGCTGAAAAAACAGAAATGGAGTGCGTTGAAACAGCTTTGAAAACAAGTTTAAGGAAAGACATGACCGTAAAACTCAACCCACAAACATTCGTTGATGAACTTTCATGTCTCAATGCACAAAATGGTACCTCTTGTGATGATTTTTTTGTTGACGACCTACTTGACTTCTCTCACGTGATTgaagaacaacaacaacaagaggaagaaaaagaTTCCTCTATTTGTGTCTCCCTCAAACAACACAACCAAAACCATGAAATTTCAAACCTTAACTCAACCAGTTTCTCTCTCAAAGACGATTTTTGTTCCTTACCTACCACTGACCTCAACGTTCCGAGTGATGATGTTGCAGACTTGGAATGGCTCTCTCATTTCGTTGAAGATTCCGATTCCTTCTCAGAATTCTCTGCTGCTTTACCTGTGGTTACTTTAACAGAGAAAAACCCAAAGAGTGTTGTTGTGGTTAATGAGTCTGAGCCCAAGCCCGAGAATAAGCCCAAAAGCCCGGTTTTTTCTCAACCCTGTTTCAAAACTCCGGTTCAGACCAAAGCTAGAAGCAAAAGAACAAGAACCAGTGTTCGGGTTTGGCCATTCGGGTCAAATTCTTTAACCGAATCTTCTTCAAGCTCAACCACAACTTCGTCTTCAACCTCTTCTTCACCTACTAGCACCTTGTTGATTTACACCAACTTAGCTCAAAATCTTGAAAAGGTTTATTCGGTTCCGGAGAAGAAACCGAAGAAAATAGCTTCTTTTAATGGGTCGGGTCACGGCACGGTGGCTCTGGCGCCGCGACGGTGCAGTCATTGCGGTGTTCAGAAAACCCCTCAGTGGCGAACTGGCCCACTTGGAGCGAAAACGCTTTGCAATGCATGTGGGGTCCGTTTTAAATCGGGTCGGTTATTACCCGAATACAGACCCGCTTGTAGTCCTACATTTTCAAGTGAATTACACTCAAACCATCACCGGAAAGTGCTCGAGATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAACCGGTTTGTCTCCTTCTCCGGTTGTTCCAAGTTtttga 1143 0.4287 MLYQTPYPLLFQFHPLPSSSTIQQVPLPQAEKTEMECVETALKTSLRKDMTVKLNPQTFVDELSCLNAQNGTSCDDFFVDDLLDFSHVIEEQQQQEEEKDSSICVSLKQHNQNHEISNLNSTSFSLKDDFCSLPTTDLNVPSDDVADLEWLSHFVEDSDSFSEFSAALPVVTLTEKNPKSVVVVNESEPKPENKPKSPVFSQPCFKTPVQTKARSKRTRTSVRVWPFGSNSLTESSSSSTTTSSSTSSSPTSTLLIYTNLAQNLEKVYSVPEKKPKKIASFNGSGHGTVALAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVETGLSPSPVVPSF 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00644 380 ProSiteProfiles GATA-type zinc finger domain profile. 290 326 IPR000679 GO:0006355|GO:0043565
Car08g00644 380 PANTHER GATA TRANSCRIPTION FACTOR 35 364 - -
Car08g00644 380 MobiDBLite consensus disorder prediction 184 204 - -
Car08g00644 380 CDD ZnF_GATA 295 343 IPR000679 GO:0006355|GO:0043565
Car08g00644 380 Pfam GATA zinc finger 296 330 IPR000679 GO:0006355|GO:0043565
Car08g00644 380 ProSitePatterns GATA-type zinc finger domain. 296 321 IPR000679 GO:0006355|GO:0043565
Car08g00644 380 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 293 353 - -
Car08g00644 380 Gene3D - 290 363 IPR013088 GO:0006355|GO:0008270
Car08g00644 380 MobiDBLite consensus disorder prediction 231 251 - -
Car08g00644 380 PANTHER GATA TRANSCRIPTION FACTOR 35 364 - -
Car08g00644 380 SMART GATA_3 290 344 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00644 Car-Chr8 5504566 5506278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00644 39 380 C2C2-Gata Transcription Factor Family AT5G66320 49.292 4.61e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car08g00644 GATA 5.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00644 - - var:108335072 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00644 08 5504566 5506278 Car07g01586 07 15862951 15864512 PCT