Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00642 ATGGGTCGTGGAAAGATTGAGATAAAGTTGATTGAGAATCCTACTAACAGGCAAGTTACATACTCAAAGAGACGCAATGGTATCTTCAAGAAAGCTCATGAACTTAGTGTTCTTTGTGATGCTAAGGTTTCACTTATCATGTTCTCCAAAAACAACAAGATGCATGAATACATCACTCCTGGCCTTTCTACAAAGAAGATCATTGATCAGTATCAGAAGACTGTAGGGGATATTGATCTCTGGCGTTCTCACTATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAAGATATTAACAATAAACTGAGAAGACAGATAAGACATAGAATAGGTGAGGGTGGTTTGGAATTGGATGATCTCAGCTTCCAACAACTGCGTTCTCTTGAAGATGATATGGTTTCTTCCATTGCAAAAATACGCGACAGAAAGTTCCATGTGATCAAAACTCGAACTGATACCTGTAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAATGGAAATCTCCTACTTGAACTTGAAAAGTGTGTGATCCATCATCCATCATTTATTTTCCACGATGAAGGAGAGGAGGAATCATTGGCGAACGGTGCATCCACCCTGTATGCATTCTGTCACCACCATTCTCATCTGAATCATCATCACATTCCTCACCACCACCATGGAGGAGAAGAAGAAGCCTTTAAAACTGATGATTTGCGCCTTGCTTGA 708 0.3983 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQYQKTVGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGGLELDDLSFQQLRSLEDDMVSSIAKIRDRKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEKCVIHHPSFIFHDEGEEESLANGASTLYAFCHHHSHLNHHHIPHHHHGGEEEAFKTDDLRLA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00642 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car08g00642 235 Coils Coil 85 105 - -
Car08g00642 235 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g00642 235 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Car08g00642 235 MobiDBLite consensus disorder prediction 217 235 - -
Car08g00642 235 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g00642 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car08g00642 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car08g00642 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car08g00642 235 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Car08g00642 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car08g00642 235 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 234 - -
Car08g00642 235 MobiDBLite consensus disorder prediction 213 235 - -
Car08g00642 235 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Car08g00642 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car08g00642 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Car08g00642 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00642 Car-Chr8 5484498 5486534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00642 1 218 MADS-box Gene Family AT3G54340 48.649 1.43e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car08g00642 K-box 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00642 K09264 - gmx:100784496 369.007