Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00609 ATGTCGTTGAGAAGCATAGTAAGGGAACTCAAGGAGATGAGGGATGGGATTGGTAACACGTCGAGGCGACGTGTTGGAAATAGGAATTCACAGCGTCGGACGAAGTCACACATTGTTCCTGATATCACTCTAACAACACTTGAACCTCAGGGACAATGGGCTAATATACCACCTGAGTTGCTTCTTGATATAATTCGGAGGGTAGAAGAGACTGAGACTTCTTGGCCTGCACGTGCCGCTGTTGTTTCTTGTGCTTCCGTGTGTAAATCTTGGAGGGCCGTTACAAAAGAGATTGTCCAGACACCCGAGCAGTGCGGAAGGTTGACATTTCCTATTTCATTAAAGCAGCCGGGTCCTCGCGATTCTCCAATTCAGTGCTTCATCCGCAGGGACAGAGAAACTTCTGTGTATCAATTGTACTATGGACTGGTGCCATCGGAAAATGAGTCTGATAAGCTGTTATTAGCTGCCAAAAAGATAAGGAGGGCAACAGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTTCTCGGTCCAGCAATGCTTATGTCGGAAAACTCAGGTCTAATTTTCTGGGTACCAAGTTCACTATATATGACAGCCAACCTCCGCAAGGAACTGGTATTCAACCAAACAGGCGGTCCAGTAGGAGATTTCATTCTAAGCAGGTGTCTCCAAGAGTTCCAGCATGTAACTATATTATTAGCACCATTGCCTATGAGCTGAATGTTCTCCGCACAAGAGGGCCAAGAAGAATGAACTGCATCATGAATTCGATACCTGTGTCAGCTGTTCAGGAAGGGGGCACTGCTCCTACTCCTACATCTTTTCCTCAAATTACCGATGAGCATATTTGTCCCGCACTAGCACCAGCCCCTAAAGGTAATGTTCCAATTGGAGATTTAAGCAATTCATCCCTCCTAGAGATGCCAGCACAGAGCCAAGGCTCAGTTGAATCCCTGGTACTTAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGCTTAAACTTCAGGGGCCGTGTTACAGTGGCTTCGGTTAAGAACTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAGCAAGAAAAGCATGCGAATGAGACCCATGTCAATCTGTCATTGTCTGCAGGTGACTTCATATAA 1173 0.4587 MSLRSIVRELKEMRDGIGNTSRRRVGNRNSQRRTKSHIVPDITLTTLEPQGQWANIPPELLLDIIRRVEETETSWPARAAVVSCASVCKSWRAVTKEIVQTPEQCGRLTFPISLKQPGPRDSPIQCFIRRDRETSVYQLYYGLVPSENESDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPQGTGIQPNRRSSRRFHSKQVSPRVPACNYIISTIAYELNVLRTRGPRRMNCIMNSIPVSAVQEGGTAPTPTSFPQITDEHICPALAPAPKGNVPIGDLSNSSLLEMPAQSQGSVESLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDPSHNVSAAEQEKHANETHVNLSLSAGDFI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00609 390 Gene3D Tubby Protein; Chain A 113 382 IPR025659 -
Car08g00609 390 SUPERFAMILY Tubby C-terminal domain-like 102 364 IPR025659 -
Car08g00609 390 MobiDBLite consensus disorder prediction 17 36 - -
Car08g00609 390 Pfam F-box domain 53 100 IPR001810 GO:0005515
Car08g00609 390 Gene3D - 48 102 - -
Car08g00609 390 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Car08g00609 390 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 373 - -
Car08g00609 390 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Car08g00609 390 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Car08g00609 390 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Car08g00609 390 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Car08g00609 390 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Car08g00609 390 PANTHER TUBBY-RELATED 1 373 - -
Car08g00609 390 MobiDBLite consensus disorder prediction 203 223 - -
Car08g00609 390 Pfam Tub family 114 372 IPR000007 -
Car08g00609 390 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00609 Car-Chr8 5234304 5237308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00609 1 373 TUB Transcription Factor Family AT2G18280 60.477 4.30e-151 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Car08g00609 Tub 3.2e-79 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00609 K19600 - gmx:100798958 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00609 08 5234304 5237308 Car07g01550 07 15282407 15285336 PCT