Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00608 ATGAGAACTGTTACCGGTGAAGAAGTGGAGATGTTACCTAATTCCCGCCTCTTTCAGGTACATAGTAAAATATGCACAGAACTGTTAAAATTAGTCGACAGTATTATGAGGATATTGCCAGAAATCGAGGCAGCAAGACCAAAATGCTCATCAGGAATAGAGTCTCTGTGTTTTCTGAACAACTCAATTGAGAAAGCCAAACTACTTCTGCAACATTGCTCCGAATGCAGCAAACTCTACCTGGCTGTGACAGGGGACACAGTACTTTCAAGATGCCAAAAAGCAAAAAAGTCATTAGAAAAAAGCTTAATCCCCATTCAGGGTATGGTTCCGCTTATGTTGGCAGTAAAGGTTTCTAGAATAATTGATGATCTTGAGTTTGCTACATTTGTTCTGGACTCTGCTGAAGAAGAGGCTGGTAGAGTTGTAACAGAATTGCTTCAGCGAGGTACTTCAACATCAGATTCAGCCGATGATTTCGAAATTAAAGCTCTTCAGTTTGCAGCACCAAGATTGAATTTAACATCTAAAAAGGCCATATTAATAGAGATAAGATCTATCAAGAAGTTGGCAGTTAAAGTTGGACCAAATGACCAGAAAAAGAATATGATCTTGAGATATCTTATGCATCTATTGAAAAAGCATGGAAACTTCATCGTAGGAGAACACATGGAGGAGTTTTATTCTCATAGCAAAGAAACAAAAGCAAATGATAATAACTCAAGTCGTGATTCTCGACGAAGCCGTCGTGTTGAGTCAGATCCTAGCTTGAACTATGGTCAATATAGATCTCACACCAGTGAATTGGATAGAGTGATCCCTCCTGAGGAATATAAGTGTCCAATATCCTTAAGATTGATGTATGATCCTGTTATCATTGCTTCTGGAGTAACATATGAAAGGATGTGGATAACAAAGTGGTTTAGTGAGGGTAAAACTATATGTCCAAAAACAAAAAAGGAACTACCTCATATGTCATTGACTCCAAATGTTGTCATGAAGGACTTAATTTCAAAGTGGTGCAAACATAATGGAGTCTCCATTCCTGATCCAAGTAGACATGCAGAAGATTTTCACTTAATGGACGCTTCAATCACCTCCATTAAGAGTTTGGGAAGTTATTTCAATGATTTGAATTTGTCAATGGATCTTACTAGCATGTCACTTGGATCATTGGATACTAGTTATAACTCAGACGCCTCGCGAGTTAAGaccaataatgacttgaatttgatgatgagcaagactagtgaaaattcttacaagcAAAGAGTTCATGCAGAGATACACGATACAGATTTGATGCTCTTGCCTAAACTTCATGATCTTCAATGGGATTCTCAGTGTAAGGTCATTGAAGATTTGAAAGATCATTTGAAAAGCAATAGCCAAGCtatttcttctgtgtcagctgaaaatttagttgaaccagtagtcagatttttaagcaatgcaaatgatctgCATGACGTGAAAGCGTTGACAGCTGGAACTCAGCTTCTGTTGGAATTTGTGAATTACTGCAGAAATGGTATGGATAATTTAAGTGAAGATACATTCATTAAGTTGGCAAATCTTCTTGATTCAGAAGTGATAGGACAAGTACTTGCCATAATGGAAGAACTGTCAGGGGATGGATATAGTAAATCTAAAATTACAGCATCCAATGCACTTACTTGTGTCCTAAAATTACTTGATTCTGATAACAAAGGGTTCCAACAGCAAGCTATAAGAATAATGTACAATTTGTCCTTCAATATTGAAGTTTGTCCCCACATGGTATCCCTCAACTGCATCCTAAAATTGCTGCCATTTTTCAAAGACAGGGCAGTTTTGAGATACTGCATATATATATTGAAAAACATTTGTGATACTGAAGAGGGTAGGAATTCTATTTCTGAAACTAAAGGATGCATATCTTCTATTGCTGAAATACTTGACAGTGGAAGTAATGAGGAGCAAGAACATGCTTTAGATGTTTTACAATCTTTATGTTCATGCTCTCAAAGTGTGGATTATAGCAAGTTGATTTTGGATGAGAATATCATCAATCCTCTTTTCTATATCTCACTGAATGGAAGTGATAAAGGAAAGGAAAGTGCATTGGAACTGCTACATATCTTGAGAGATGCTAAATATGTTGAGAATGAAGATAGCTCCTCTGAACCAATTACCAACACTTCTAGAGATTCCAATAGTCACCATGAAGAAAACAGATCATCAAAGAGATCACCATTTCTGAAGTTGTTCTCAAAACCCAGTTCACATGCAGCAAAAACCAAAAGGTGA 2289 0.3521 MRTVTGEEVEMLPNSRLFQVHSKICTELLKLVDSIMRILPEIEAARPKCSSGIESLCFLNNSIEKAKLLLQHCSECSKLYLAVTGDTVLSRCQKAKKSLEKSLIPIQGMVPLMLAVKVSRIIDDLEFATFVLDSAEEEAGRVVTELLQRGTSTSDSADDFEIKALQFAAPRLNLTSKKAILIEIRSIKKLAVKVGPNDQKKNMILRYLMHLLKKHGNFIVGEHMEEFYSHSKETKANDNNSSRDSRRSRRVESDPSLNYGQYRSHTSELDRVIPPEEYKCPISLRLMYDPVIIASGVTYERMWITKWFSEGKTICPKTKKELPHMSLTPNVVMKDLISKWCKHNGVSIPDPSRHAEDFHLMDASITSIKSLGSYFNDLNLSMDLTSMSLGSLDTSYNSDASRVKTNNDLNLMMSKTSENSYKQRVHAEIHDTDLMLLPKLHDLQWDSQCKVIEDLKDHLKSNSQAISSVSAENLVEPVVRFLSNANDLHDVKALTAGTQLLLEFVNYCRNGMDNLSEDTFIKLANLLDSEVIGQVLAIMEELSGDGYSKSKITASNALTCVLKLLDSDNKGFQQQAIRIMYNLSFNIEVCPHMVSLNCILKLLPFFKDRAVLRYCIYILKNICDTEEGRNSISETKGCISSIAEILDSGSNEEQEHALDVLQSLCSCSQSVDYSKLILDENIINPLFYISLNGSDKGKESALELLHILRDAKYVENEDSSSEPITNTSRDSNSHHEENRSSKRSPFLKLFSKPSSHAAKTKR 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00608 762 MobiDBLite consensus disorder prediction 716 762 - -
Car08g00608 762 CDD RING-Ubox_PUB 278 320 IPR045210 -
Car08g00608 762 SUPERFAMILY ARM repeat 436 708 IPR016024 -
Car08g00608 762 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Car08g00608 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 348 IPR013083 -
Car08g00608 762 MobiDBLite consensus disorder prediction 729 743 - -
Car08g00608 762 MobiDBLite consensus disorder prediction 230 261 - -
Car08g00608 762 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Car08g00608 762 MobiDBLite consensus disorder prediction 230 253 - -
Car08g00608 762 Pfam U-box domain 275 344 IPR003613 GO:0004842|GO:0016567
Car08g00608 762 SUPERFAMILY RING/U-box 266 351 - -
Car08g00608 762 Gene3D - 435 722 IPR011989 -
Car08g00608 762 PANTHER U BOX DOMAIN-CONTAINING 3 742 - -
Car08g00608 762 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00608 Car-Chr8 5228698 5233653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00608 9 734 U-box Gene Family AT4G36550 37.265 5.32e-138 422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00608 08 5228698 5233653 Car07g01547 07 15269678 15276130 PCT