Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00605 ATGGAAATGAAAGCCGAAAACAAAGAAACAAAAACGGGAACAACAAGTTTAGGTTACAATAATCTTCCTAATAGCAATAGAAAttcttcttcttcatcttctcctcctCAAAATTCACACCATAACTATAATCTTTATCCACCACCACATCTTGCATCTTCTCAAAGACCTATCATCACAGATCCAGATCCAACGGTTacaacaaccgcaacaaacacttccactactccaataacaccacaaccacaacaaacaataacaacgacaacaacaaaaaTCTGTTACCGAGAATGTCTGAAAAACCACGCAGCAAGCATGGGAAGCCACGTGGTAGATGGATGTGGCGAATTCATGCCAAGCGGTGAAGAAGGAACACCAGAATCATTCAAATGTGCTGCTTGTGATTGTCACCGAAATTTCCACAGAAAACATGTTCAACAACAACATGTTCCTAATCCTAATTATCACCTTAATTTTCCAACACCTTCTTCTTCTAATAGATTTTCGCACGTGCTTACCACGCCGACTAATTCCTCCGGACAAGTTCAACCGTTGATGATGACATTTGGAGGCGCAGCTGAATCATCAAGCGAGGATCTCAATATGTTTCAGTGTAACGCGGGTGCACAATTCTCCCTACAGGCGCAGCCGGTTTCCAAGAAGAGGATGAGGACGAAATTCTCACAGGAGCAGAAGGATAAGATGATGGAGTTTGCTGAAAAGGTTGGGTGGAAGATTCAGAAAACTGATGAACAAGAAGTGCAACAGTTTTGTTCTCAAGTTGGTATCAAGAGACAGGTTTTTAAGGTTTGGATGCACAATAACAAACAAGCTATGAAGAAAAACCAAATGTAA 855 0.3614 MEMKAENKETKTGTTSLGYNNLPNSNRNSSSSSSPPQNSHHNYNLYPPPHLASSQRPIITDPDPTVTTTATNTSTTPITPQPQQTITTTTTKICYRECLKNHAASMGSHVVDGCGEFMPSGEEGTPESFKCAACDCHRNFHRKHVQQQHVPNPNYHLNFPTPSSSNRFSHVLTTPTNSSGQVQPLMMTFGGAAESSSEDLNMFQCNAGAQFSLQAQPVSKKRMRTKFSQEQKDKMMEFAEKVGWKIQKTDEQEVQQFCSQVGIKRQVFKVWMHNNKQAMKKNQM 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00605 284 ProSiteProfiles 'Homeobox' domain profile. 218 282 IPR001356 GO:0003677
Car08g00605 284 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 95 144 IPR006456 -
Car08g00605 284 MobiDBLite consensus disorder prediction 58 84 - -
Car08g00605 284 Gene3D - 208 281 - -
Car08g00605 284 MobiDBLite consensus disorder prediction 1 84 - -
Car08g00605 284 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 220 277 IPR006455 -
Car08g00605 284 Pfam ZF-HD protein dimerisation region 93 145 IPR006456 -
Car08g00605 284 MobiDBLite consensus disorder prediction 10 44 - -
Car08g00605 284 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 95 144 IPR006456 -
Car08g00605 284 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 26 282 - -
Car08g00605 284 SUPERFAMILY Homeodomain-like 214 281 IPR009057 -
Car08g00605 284 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00605 Car-Chr8 5192609 5194699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00605 40 284 ZF-HD Transcription Factor Family AT2G18350 47.692 5.23e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car08g00605 ZF-HD_dimer 4.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00605 - - mtr:MTR_5g020510 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00605 08 5192609 5194699 Car07g01544 07 15239131 15240118 PCT