Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00600 ATGATGCATCGTTCTTGCAGTGCTTCTTCTACTCATCAGATGGGACACTGCACATGTGGTATGTTTCATGGACAAAACAATTCCTTCTCAATGTTATTCTCAAAACCTTACGATGAATCAGACACGTATAATTGTTTCAATCcttcttcttcttcttctGTTGTTGACTGTACTCTCTCTCTTGGAACTCCGTCCACTCGTTTCACTGAAGATGAAGAGAAACGAAACCGACATGAACAACGTCGCTCTGTTAAAAACTTCTGTTGGGATTTACTACAACCTAAACATAACAATGTTCAATCTCAAACCAAAATCACACGAGGAACCACCAATATTGTTAATAACAACAACAATGATTCTCTTCTTGCTCGTCGTTGTGCAAACTGTGACACCACTTCCACACCCCTTTGGAGGAATGGCCCTCGAGGCCCTAAGTCACTGTGCAATGCGTGTGGGATTAGATTCAAGAAGGAAGAAAGAAGAGCAAGTGCCGCCGCCGTCACACCAACCGCGGTGTCCGGCGGCGTAATGGAATCGGCTCCGATATATAACCACCACAACAATTCATGGTACGTACACCCACAGAATCAAAAAATGCAGTGCTTCTCTCCGGCAATGAGTAACGAATTCCGTTTCGTTGATGAAACCGATCGTGAATCTGATAATGGCATTCCCTTTCTCTCTTGGAGACTCAACGTCACTGATAGAACCAGCTTTGTTCATGACTTTACTCGATGa 738 0.4282 MMHRSCSASSTHQMGHCTCGMFHGQNNSFSMLFSKPYDESDTYNCFNPSSSSSVVDCTLSLGTPSTRFTEDEEKRNRHEQRRSVKNFCWDLLQPKHNNVQSQTKITRGTTNIVNNNNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAVTPTAVSGGVMESAPIYNHHNNSWYVHPQNQKMQCFSPAMSNEFRFVDETDRESDNGIPFLSWRLNVTDRTSFVHDFTR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00600 245 CDD ZnF_GATA 125 157 IPR000679 GO:0006355|GO:0043565
Car08g00600 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 164 - -
Car08g00600 245 Pfam GATA zinc finger 126 160 IPR000679 GO:0006355|GO:0043565
Car08g00600 245 Gene3D - 122 179 IPR013088 GO:0006355|GO:0008270
Car08g00600 245 PANTHER GATA TRANSCRIPTION FACTOR 18 1 244 - -
Car08g00600 245 ProSitePatterns GATA-type zinc finger domain. 126 151 IPR000679 GO:0006355|GO:0043565
Car08g00600 245 ProSiteProfiles GATA-type zinc finger domain profile. 120 156 IPR000679 GO:0006355|GO:0043565
Car08g00600 245 SMART GATA_3 120 173 IPR000679 GO:0006355|GO:0043565
Car08g00600 245 PANTHER GATA TRANSCRIPTION FACTOR 18 1 244 IPR044272 GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00600 Car-Chr8 5152353 5153929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00600 1 245 C2C2-Gata Transcription Factor Family AT3G50870 44.518 3.26e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car08g00600 GATA 5.9e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00600 - - gmx:100790571 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00600 08 5152353 5153929 Car07g01540 07 15179775 15180797 PCT