Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00589 ATGGAAGTGAAGAACAAAGAGAAGAACGACGATCCTACAGTTGAATCACCAACTTCGGTACTAGAAGAAGAGTTGGAAGAGGTGGTTGTTGCCGATGATGGTGTTGTATCGAAATCAATGGCAGAGGAGGAAGAGAAGTTACTTAAAGCTCGTGTTGAGGAAGAGAAGGAACAGTGTGAAGAAGCGCCTAATCTTAACGACACACAGTTTAACAAGTTAGATGAACTTTTAACACAAACGAAACTGTACTCTGAGTTTCTTCTTGAGAAAATGGATGATATCACATTGACTGCGGGTGAACAAGAGAAACAGGATGAAGAAGAGAGCCAACCAGTTGCAAAAAAGAACGGCCGAGGATCAAAAAGAAAGGCAGCTTCACAATGCAATACTAGGAAAGCCAAAAGGGCAGTTGAAGCCATGATTACAAGATCTAAAGAAAACGTGAAGACTGAAGATGTGAATTTGAGTGAGGAAGAAAAAACTGAGAAAGAGCAGAAGGAGCTTATGCCTTTACTAACTGGTGGGAAATTGAAGTCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACGATCCAAACGATTGGGTTTCTTTCTCATCTGATAGCAAAAGGTTTGAATGGTCCATATATGATAATTTCTCCACTATCAACCCTCTCCAATTGGATGAATGAGATTTCTAGGTTTGCACCATCACTCCCTGCTATTATCTACCATGGTAACAAACAACAGAGAGATGACATCAGAAGGAATCATATGCCTAGAACAGTTGGCCCAAAATTTCCAATTGTAATAACTTCTTATGAGATTGCGATGAATGATGCTAAGAAATGCTTCAGGTCATACAATTGGAAATATCTTGTTGTTGACGAGGGACACAGGCTCAAAAACTCAAAATGCAAATTAGTGAAGGAATTGAAATACATTAAAGTTGAAAATAAGCTTCTTTTGACTGGGACGCCGCTTCAGAATAACTTGGCAGAGCTATGGTCATTGTTGAACTTCATCTTACCTGATATATTCTCATCCCTTGAAGAGTTTGAGTCATGGTTTAATCTGTCAGGAAAGTCTTGTAATGGAGCAACCATGGAGGAATTAGAAGAGAAAAGAAGAGCCCAAGTAGTAGCAAAGCTTCATGCAATTCTTAGGCCATTTCTTTTGCGTAGAATGAAGTCTGATGTTGAGCTAATGTTGCCACGGAAAAAAGAGATCATTGTATATGCTAACATGACCGAGCATCAGAAGAGCTTGCAGGAACATTTAATTAATGAGACACTAGGGAAATATTTGAATGACAAACTTTCAATTGGACGCTCTGTGACAAAGCTCAATAATTTGGTTCTTCAACTTAGGAAAGTCTGTAACCATCCTGACCTCCTAGAATCAGCTTTTGATCGTTCATATTTTTATCCTCCTGTGAATGAGATCATTGAACAATGTGGAAAATTCCATTTGCTCAACCGATTGTTGGAACGGCTATTTGCACGAAATCACAAAGTTCTGATCTTCAGTCAGTGGACTAGAGTGTTGGATATAATGGATTATTATTTCAGTGAAAAAGGCTTTGAAGTTTGCAGGATTGATGGTTCAGTGAAACTGGAGGATAGGAAACGGCAGATCCAGGACTTCAATGATACAAACAGCAATTGCCGAATCTTCCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGCCTGTTCATGTTTACAGGCTCGCAACTGCTCAATCAGTAGAGGGTCGAATGTTAAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAAGAGCGTACAAAGCCTGCCATTGTGGATGAGATGGAGGAAGAGGATGTTTTGGCCTTGCTTCGAGATGAAGAAACAGCTGAGGACAAAATGATACAAAAAGATATTAGTGATGAAGACCTGGAGAAGATATTGGATCGCAGTGATCTTGTTATCAATGGTTCCGGCGATGATAAAGCTCCAGCTAGTACCTTTCCCCTTAAAGGGCCTGGTTGGGAGGTGGTAATTCCAACTGCAACTGGGGGCATGCTTTCCACTCTTAACAGTTAA 2232 0.4037 MEVKNKEKNDDPTVESPTSVLEEELEEVVVADDGVVSKSMAEEEEKLLKARVEEEKEQCEEAPNLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLTAGEQEKQDEEESQPVAKKNGRGSKRKAASQCNTRKAKRAVEAMITRSKENVKTEDVNLSEEEKTEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLIAKGLNGPYMIISPLSTLSNWMNEISRFAPSLPAIIYHGNKQQRDDIRRNHMPRTVGPKFPIVITSYEIAMNDAKKCFRSYNWKYLVVDEGHRLKNSKCKLVKELKYIKVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKSCNGATMEELEEKRRAQVVAKLHAILRPFLLRRMKSDVELMLPRKKEIIVYANMTEHQKSLQEHLINETLGKYLNDKLSIGRSVTKLNNLVLQLRKVCNHPDLLESAFDRSYFYPPVNEIIEQCGKFHLLNRLLERLFARNHKVLIFSQWTRVLDIMDYYFSEKGFEVCRIDGSVKLEDRKRQIQDFNDTNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTKPAIVDEMEEEDVLALLRDEETAEDKMIQKDISDEDLEKILDRSDLVINGSGDDKAPASTFPLKGPGWEVVIPTATGGMLSTLNS 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00589 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 407 IPR027417 -
Car08g00589 743 Gene3D - 413 708 IPR027417 -
Car08g00589 743 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 189 357 IPR014001 -
Car08g00589 743 Pfam SNF2-related domain 180 477 IPR000330 GO:0005524|GO:0140658
Car08g00589 743 PANTHER SNF2/RAD54 HELICASE FAMILY 17 742 - -
Car08g00589 743 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 659 IPR001650 -
Car08g00589 743 CDD SF2_C_SNF 489 623 - -
Car08g00589 743 PANTHER BNAC07G16550D PROTEIN 17 742 - -
Car08g00589 743 Coils Coil 38 62 - -
Car08g00589 743 MobiDBLite consensus disorder prediction 99 115 - -
Car08g00589 743 Gene3D - 141 406 IPR038718 -
Car08g00589 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 699 IPR027417 -
Car08g00589 743 SMART helicmild6 529 613 IPR001650 -
Car08g00589 743 MobiDBLite consensus disorder prediction 1 22 - -
Car08g00589 743 SMART ultradead3 173 368 IPR014001 -
Car08g00589 743 MobiDBLite consensus disorder prediction 99 131 - -
Car08g00589 743 Pfam Helicase conserved C-terminal domain 504 613 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00589 Car-Chr8 5000602 5006296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00589 157 634 RAD5 or RAD16-like Gene Family AT3G16600 24.191 1.39e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car08g00589 SNF2_N 5.6e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00589 K19001 - gmx:100777687 1217.99