Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00572 ATGAACCATGGACCAACCCAAGACCAAATGATGCTCATTTCTCAACTATTCCCCTCTAGTGCATACACTCAAATTATTTCTCAACAAGGGGAGAATAAGAAGGCAAGACGGAGACGTAATAAGAAGAGCAAAGGAGGAGAAAACGGTGGTAATGAAATGAACAAAAAGAGAAAGCTAAGTGAAGAACAAGTTAATTTGCTTGAACAAAATTTTGGAAATGAACACAAACTTGAGTCAGAAAGGAAAGATAGGCTTGCAATGGAGCTTGGTTTGGATCCTAGACAAGTTGCTGTTTGGTTTCAAAATAGAAGAGCTCGTTGGAAGAACAAAAAACTTGAAGAAGAATACTCAAATCTTAAAAAAATTAATGAATCCACTTTGCTCGAGAAATGTCGCCTTGAAACTGAGGTTTTAAAGCTAAGGGAGCAACTTTGTGAGGCAGAGAAAGAGATTCAAAGGCTTCGAGAACCCATTGAAAGAGTCGACCCAAGTAATAGCTCAAGTACTTCATCACATGAGTCACAATCAATGGAAGTGGTGGACCCACCATTTCTAGGTGAATTTGGAGTTGATGTATATGATGATGATGTGTTTTACGTGCCTAATGAGACACATTACTTCAATGGCATGGAATGGATCAATTTGTATATCTAA 654 0.3807 MNHGPTQDQMMLISQLFPSSAYTQIISQQGENKKARRRRNKKSKGGENGGNEMNKKRKLSEEQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKINESTLLEKCRLETEVLKLREQLCEAEKEIQRLREPIERVDPSNSSSTSSHESQSMEVVDPPFLGEFGVDVYDDDVFYVPNETHYFNGMEWINLYI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00572 217 SMART HOX_1 53 114 IPR001356 GO:0003677
Car08g00572 217 SUPERFAMILY Homeodomain-like 54 118 IPR009057 -
Car08g00572 217 Gene3D - 46 120 - -
Car08g00572 217 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Car08g00572 217 CDD homeodomain 55 111 IPR001356 GO:0003677
Car08g00572 217 Coils Coil 102 129 - -
Car08g00572 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 216 - -
Car08g00572 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 216 IPR045224 GO:0003700
Car08g00572 217 MobiDBLite consensus disorder prediction 44 59 - -
Car08g00572 217 MobiDBLite consensus disorder prediction 156 178 - -
Car08g00572 217 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Car08g00572 217 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Car08g00572 217 MobiDBLite consensus disorder prediction 27 59 - -
Car08g00572 217 Coils Coil 50 70 - -
Car08g00572 217 MobiDBLite consensus disorder prediction 161 177 - -
Car08g00572 217 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Car08g00572 217 Pfam Homeodomain 55 109 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00572 Car-Chr8 4871017 4873240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00572 1 217 Homeobox Transcription Factor Family AT4G36740 53.812 9.05e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Car08g00572 Homeodomain 7.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00572 K09338 - gmx:100809616 297.36