Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00562 ATGCAACAAAAGAACCCCAACATGACAAACAACGTTACACCCCAACAAGAGCAACTGAAAATTCAAAACGAGTGGGAAACACGCGCCACGCAACCCAAACGCGGTCCAAAATCTGTAACCGTACATAACAGAATACGCCAAAGTGGTGAAAACAATCGCCAGCACTTGAAAAGATTGAGAGTATTCGAGCCAAAGAAAAGACATGAAAGTCGAAATGGAATGAACCAATTTGTTTCTTTGATTTCAGCGACGGAGGAGAGTAATATTCCGGCGAAAATGGTGGTGGAGATTATGGTTACGGTGAGGGAATGGAGAGCAGGGCTTTTCACTCCAAGATTCACCTTTCCCATCAACAAAATCTCCGTCTTCTCCCACCCCACCTATCGAATCATCCAAAGGGTTACACAAATGTCAAGTGGTTTTGGAGAATCAACGAGATCATTTCCTCCAAATCCGTCATGTTCTTCAGGGAACAATCCCAACAACGATGCTGGCGATTTTGAATGCAACATATGTTTCGATTTGGCTCAGGATCCTGTGATCACACTTTGTGGTCATTTATTCTGTTGGCCTTGTCTTTATAGATGGCTACATCATCATTCACATTCTCAAGAATGTCCTGTTTGCAAAGCCCTTGTTGTTGAAGAGAAATTGGTTCCTCTTTATGGTAGGGGAAAATCGCAAACTGATCCGAGGACTAAATCGTATCCTGGTATGGAGATTCCACGTCGTCCTTCTGGACAGAGGCCGCAAACGGCGCCTCCCCCACCTCCTCCTGAGGCGAATTATGCTGGGTTTGGATTGATGGGTGGGTTTATTCCAATGGCAACTGCTAGATTTGGAAACTTTACGCTTTCGACTGCTTTTGGTGGGTTTATACCGTCTCTTCTTAATATTCATTTCCATGGCTTCCAAGATGCTACTGTCTATGGGACGACTTCTGGTCATCCCTTTGGGTTTAACACGTTTCAGGGTGGGAACTCAAGAGGTTTTTCTTCGCAGGCAACTGGGCAAGTGCAGCGGCAGGAGGACAATGTTTTGAAGAATCTGCTTTTGCTGATTGGTGTTTTTGTCCTTCTCACAGTTATCTTTGTTATGTAA 1101 0.445 MQQKNPNMTNNVTPQQEQLKIQNEWETRATQPKRGPKSVTVHNRIRQSGENNRQHLKRLRVFEPKKRHESRNGMNQFVSLISATEESNIPAKMVVEIMVTVREWRAGLFTPRFTFPINKISVFSHPTYRIIQRVTQMSSGFGESTRSFPPNPSCSSGNNPNNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVVEEKLVPLYGRGKSQTDPRTKSYPGMEIPRRPSGQRPQTAPPPPPPEANYAGFGLMGGFIPMATARFGNFTLSTAFGGFIPSLLNIHFHGFQDATVYGTTSGHPFGFNTFQGGNSRGFSSQATGQVQRQEDNVLKNLLLLIGVFVLLTVIFVM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00562 366 MobiDBLite consensus disorder prediction 1 40 - -
Car08g00562 366 Pfam Zinc finger, C3HC4 type (RING finger) 168 209 - -
Car08g00562 366 PANTHER RING ZINC FINGER PROTEIN-RELATED 138 364 - -
Car08g00562 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 230 IPR013083 -
Car08g00562 366 MobiDBLite consensus disorder prediction 223 260 - -
Car08g00562 366 ProSiteProfiles Zinc finger RING-type profile. 169 210 IPR001841 -
Car08g00562 366 SUPERFAMILY RING/U-box 165 222 - -
Car08g00562 366 SMART ring_2 169 209 IPR001841 -
Car08g00562 366 ProSitePatterns Zinc finger RING-type signature. 184 193 IPR017907 -
Car08g00562 366 CDD RING-HC_AtRMA_like 167 211 - -
Car08g00562 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 138 364 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00562 Car-Chr8 4761122 4763664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00562 158 364 C3H Transcription Factor Family AT2G23780 61.860 3.86e-85 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00562 K10666 - gmx:100814783 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00562 08 4761122 4763664 Car08g00562 08 4761122 4763664 ECH
Car04g03484 04 63983215 63985007 Car08g00562 08 4761122 4763664 ECH