Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00559 ATGGCATCTCAAGGTACCAATAATATATTTATGCGTTATGTTTTGGCCATTGTGATTGCCATCATTTTCACTCCAAAACTTAGTTTTGCCAAACAATCAAAGTTAATAGGCTTGAAAATGAATATGATTGATGAATGCTGGAGACCAAATCCAGAATGGAGGAGGCATCGACAACAACTCGCGACTTGTTCCGTTGGTTATGTTGGAAAAATGACAAACAACATTGGTAAGGATCTCATACATTATAAAGTTACTGACCCAAATGATGACCCCATAAACCCGGAACCTGGTACTTTGAGGTATGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGATATGCAAATTAGACTCATGAAATCTCTTCTCATTAGTAGTTTTACCACCATTGACGGTCGAGGCGTTAACGTTCACATTACTGATAATGCATGCTTGATGATATTCAAGGCCACCGACATAATCATTCATAGCATTCGAATTCATAATTGCAAAGCTCAAGCTCCAGGTATGGTGATGGGGCCTAACGGAAAAGTTATTTCTTTAGGGCAAGTAGATGGAGATGCAATTAGATTGGTTACCGCGTCAAAAATTTGGATTGATCATAATACGCTTTATGAAAGTGAAGACGGCCTTCTTGATGTCACGCGAGGTTCTACAAATGTGACTATATCCAATAATTGGTTTAGAGAACAAGATAAGGTAATGCTTCTTGGACACGATGATGGGTATGTGAGAGACAAAAACATGAAAGTTACTGTTGTGTATAATCATTTTGGACCTAATTGCAACCAACGAATGCCAAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTATTTGGGGTGGGTACAATATGCCATCGGAGGAAGCATGGGACCTAGCCTCAAAAGCGAAGCTAACCTCTTCATAGCTCCAAATGTTGGGAGTAAGGAGGTAGTAACATGGCGAAAAGATGGTTATAAAAATGTTGACAAATGGGAATTTTATTCGGTCAGAGATGCTTTTGAAAATGGAGCCTCATTTGTGGTAACAAAAGGGGGACGCGTGCCAAAGCCAAATTATAGTAAAGAACAAGGTTTTAAAGTTGTTGATGTTAAATCAGTTAGATCATTGACAAAATCATCAGGTGCATTTAAATGTAGTAAAACATCTATATGTTAA 1179 0.3842 MASQGTNNIFMRYVLAIVIAIIFTPKLSFAKQSKLIGLKMNMIDECWRPNPEWRRHRQQLATCSVGYVGKMTNNIGKDLIHYKVTDPNDDPINPEPGTLRYGASVIQGKVWITFQRDMQIRLMKSLLISSFTTIDGRGVNVHITDNACLMIFKATDIIIHSIRIHNCKAQAPGMVMGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLYESEDGLLDVTRGSTNVTISNNWFREQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSEANLFIAPNVGSKEVVTWRKDGYKNVDKWEFYSVRDAFENGASFVVTKGGRVPKPNYSKEQGFKVVDVKSVRSLTKSSGAFKCSKTSIC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00559 392 Gene3D - 40 385 IPR012334 -
Car08g00559 392 PANTHER PECTATE LYASE 18-RELATED 3 389 IPR045032 GO:0030570
Car08g00559 392 PANTHER PECTATE LYASE 3 389 - -
Car08g00559 392 SUPERFAMILY Pectin lyase-like 46 384 IPR011050 -
Car08g00559 392 SMART amb_all 117 314 IPR002022 -
Car08g00559 392 Pfam Pectate lyase 128 308 IPR002022 -
Car08g00559 392 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Car08g00559 392 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Car08g00559 392 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Car08g00559 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Car08g00559 392 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Car08g00559 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Car08g00559 392 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00559 Car-Chr8 4722552 4724165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00559 71 319 Polysaccharide Lyase AT5G09280 71.888 6.74e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00559 K01728 - gmx:100780437 664.84