Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00558 ATGTTTATCACCAAAATCTCCATCATTGTTGGACAACAACCTTACATAGGTTTAGCCACAACAGCATGTCCTAGAAAAGGTGATTCTAAGTCCATCCGTGGCTATGAGTGTAATGGCGAAACTCACACATGCCATGCATACCTCACCTTCAGAACTCAACCAATATACAATTCAATTTCCACAATCTCTTCTCTCTTAGGTTCCAACCCATCTCAACTAGCTGAAATAAACTCAGTTTCTTTAAATGAAACATTTGAAACAAACAAAATGGTCATTGTTCCTGTCAACTGTTCTTGTGCTAGTCACAAATATTATCAAGCAAACACAACCTATGTTTTTCAGAACACAGACACTTATTTTCTTGTTGCTAACAACACTTTTGAAGGACTTTCAACTTGTCAAGCTTTGATGAATCAAAATCATAATCCTGGTGATGTTTACCCTGGTAGAAAACTACTTGTTCCTCTTAGATGTGCTTGTCCTACAAAGAATCAAACACAGAAAAATATTAAGTATCTTTTAAGTTATTTGGTTAATTGGGGTGATTCTGTTTCACTCATTAGTGATAAATTTGGTGTTAACTTTAGAACCACTCTTGAAGCTAATACACTTTCTTTAACACAAGCTACAATCTATCCCTTTACAACACTTCTTGTTCCTCTTCTTGATAAGCCTTCAAGTTCTCAAATTCAAACACTTTTGCCAACTCAACAATCTCCACcttcctcttcttcttcttcttcttcttcttcAACAGATAAAAAATCAAACAAAACTTGGGTATATGTTGTTGTTGGAGTAGTTGGAGGACTGGTAGCTTTAACATTAGTTCTATGTGGTTTTATTTTCTTCAAACAAGGTAAAAAGAAAAATGAATTTGTGATTGTTTCTGAGACTGAGAGTACTAATTATGAGGCAAAAGTGAAACTAGAAGGGAAGAAAATGAAGAAAGTAGATGAAAAATTGTTAGAGACTATACATGGTATAGCTCAATCATTCAATGTTTATGGCTTTGAGGAACTAAAAGTTGCAACTGATAATTTTAGTCCAAGTTTTTGGATTAAAGGGTGTGTTTATCGTGGCGTTATAAAAGGCGATTTGGCTGCAATTAAGAAGATAGAAGAAGATGTTTCAAAAGAGATACAAATTCTTAACAAAATTAATCATTCAAATGTTATTCGCCTTTCGGGTGTTAGCTTCAATGAAGGAAATTGGTACCTTGTTTATGAGTATGCTTCAAATGGAGCATTAAGTGATTGGATTTTTTTCAATAACAAAATGGATGATGGAAAGTTTTTGAGTTGGATTCAAAGAATAAAGATTGCATTGGATGTTGCAACAGGTGTTGATTATCTTCACAGTTTCAATTCATTTCTTTATATTCATAAGGATCTAAAGTGTAGTAACATTCTTCTTGACACTGATTTCAAAGCAAAGGTTGCAAATTTAAGGCTTGCAAAGTGTGTGGAAAGACTTGATGAGGAACATGAAGAATTTGTTCCTACAAGACATATTGTTGGGACAAGAGGTTACATGGCTCCAGAGTATTTGGAAAATGGTATTGTTTCTACAAAGCTTGATGTGTATGCATTTGGGGTGTTGATGTTGGAAATCATCACAGGAAAAGAGGTTGCTACAATTTTATCAGAAGATAGTAAAATGAATTTGTCACATGTTTTAAGTGGTATACTTTGTGAGGAAAATGGTAATAAGAAGTTGAAGGAGTTTATGGATCCTTTACTTGAAGGAAATTATCCAATTGAACTTGCTATGTTTGTGATTGAAATTATTGATAACTGTTTGAAGAAGGATCCAGTAGATCGTCCTGCAATGAATGAGATTGTTCCAACTTTGTCAAGAATATTGAACTCTTCATTGAGTTAG 1884 0.3328 MFITKISIIVGQQPYIGLATTACPRKGDSKSIRGYECNGETHTCHAYLTFRTQPIYNSISTISSLLGSNPSQLAEINSVSLNETFETNKMVIVPVNCSCASHKYYQANTTYVFQNTDTYFLVANNTFEGLSTCQALMNQNHNPGDVYPGRKLLVPLRCACPTKNQTQKNIKYLLSYLVNWGDSVSLISDKFGVNFRTTLEANTLSLTQATIYPFTTLLVPLLDKPSSSQIQTLLPTQQSPPSSSSSSSSSSTDKKSNKTWVYVVVGVVGGLVALTLVLCGFIFFKQGKKKNEFVIVSETESTNYEAKVKLEGKKMKKVDEKLLETIHGIAQSFNVYGFEELKVATDNFSPSFWIKGCVYRGVIKGDLAAIKKIEEDVSKEIQILNKINHSNVIRLSGVSFNEGNWYLVYEYASNGALSDWIFFNNKMDDGKFLSWIQRIKIALDVATGVDYLHSFNSFLYIHKDLKCSNILLDTDFKAKVANLRLAKCVERLDEEHEEFVPTRHIVGTRGYMAPEYLENGIVSTKLDVYAFGVLMLEIITGKEVATILSEDSKMNLSHVLSGILCEENGNKKLKEFMDPLLEGNYPIELAMFVIEIIDNCLKKDPVDRPAMNEIVPTLSRILNSSLS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00558 627 SUPERFAMILY Protein kinase-like (PK-like) 332 618 IPR011009 -
Car08g00558 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Car08g00558 627 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Car08g00558 627 Gene3D Phosphorylase Kinase; domain 1 327 411 - -
Car08g00558 627 Pfam LysM domain 176 220 IPR018392 -
Car08g00558 627 Gene3D LysM domain 175 221 IPR036779 -
Car08g00558 627 ProSiteProfiles Protein kinase domain profile. 327 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00558 627 ProSiteProfiles LysM domain profile. 174 219 IPR018392 -
Car08g00558 627 MobiDBLite consensus disorder prediction 232 254 - -
Car08g00558 627 Gene3D Transferase(Phosphotransferase) domain 1 412 626 - -
Car08g00558 627 SMART serkin_6 353 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00558 627 SMART LysM_2 110 155 IPR018392 -
Car08g00558 627 SMART LysM_2 175 220 IPR018392 -
Car08g00558 627 Pfam Protein kinase domain 365 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00558 627 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 5 626 - -
Car08g00558 627 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 5 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00558 Car-Chr8 4716543 4718608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00558 7 625 Receptor kinase-like Gene Family AT2G23770 42.080 3.07e-160 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Car08g00558 Pkinase 1.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00558 - - gmx:100815842 816.609