Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00552 ATGGGTTGGTTTACAAAGTTTTTCAAACGCTACAAGCATAAAATTTCAAGATGGAAATCCAATTGCAAACATAGTGGTGATAATAGAATCCAGGATAATCATCATATTTCAGTGGATGATTTGACAGATACCGAGAAAGAAGATATCTACAAGGCAATTGCACTCTCTCTATCAAAGGAGGATCTCAAAGGAAAACCAGTTGTTGGGGAAGAATCTCAGTCTGAAGAAGACAAGCACCTTCACAAAATTGATGAGGAGGAAGATAAACATCTCAGTGAAGTTTGTCCTGAGAAAGATGAGAATTGTGGTAAACAGGATGAAAATGAATGTCGTGCCAGAGAGCAACTAGAGGATGATGAGCTACTTGCAAGGGCACTTCAAGAAAGTTTGAACGTTGATTATCCTCCTCAACATGGCAGTGATTCTTTATTTAAACCTGCTCCCCAAAGTTTTCCTCCTGGATTCAGAACATGTGCTGGCTGCAATGCTGAGATTGGCCATGGAAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCGAAATGCTTCCTCTGCAATGATTGCTGTCTTCCAATCACCGATTATGAGTTTTCTATGTCTAGCAACCGTGCTTACCATATATCCTGCTACAGGGAGAAGCATAACCCAAAATGCGATGTTTGCAAGAATTTTATCCCATCTAATTCAGCTGGCCTTATTGAGTATAGAGCTCATCCTTTCTGGGTCCAAAAATACTGCCCAAAACATGAGCACGACGACACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCAAACGATTTAAAATATATTTTGCTTGATGATGGTCGAAAGCTATGTCTCGAGTGTCTAGACTCGGCAATTATGGATAGTCGTGAATGCCAACCTCTCTACCTTGAAATTCAAAATTTTTTTGAAGGTTTAAATATGAAAGTGGAGCAGCAAGTTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAAGGAGAAAAAATTGGTCATCACCATTTTGCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTTGCCACCATTTTAAGAAGACCAAGGATTAGGGCAGGACGCCGAGCCACAGACATGATAACCAAGCCTTATAGACTGACCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTACGGCCTTCCGAGGTTGTTGACAGGATCAATCCTAGCTCATGAGATAATGCATGCATGGCTAAAGCTTAAAGGTTATCCCAATCTGAGTCCAAAAGTTGAAGAAGGAATCTGCCAAGTCATGGCTCATATGTGGTTAGAGTCAGAGCTCTATTCTGGATCCAGGAATAATGATGCCCCATCTTCATCTTCATCATTGCGGTCCACCTCTTCTGCATCATCGAAGAAGGGTAAACGGTCTGATTTTGAGATGAAACTCGGTGATTTTTTCAAACACCAAATTGAGACAGATACCTCATCAGCCTATGGAGATGGATTCAGATTGGGCAACCAGGCAGTACTTAAGTATGGACTCAAAAGTACCCTTGATCATATCCATACGACCGGAAATTTTCCGAGTTGA 1575 0.4178 MGWFTKFFKRYKHKISRWKSNCKHSGDNRIQDNHHISVDDLTDTEKEDIYKAIALSLSKEDLKGKPVVGEESQSEEDKHLHKIDEEEDKHLSEVCPEKDENCGKQDENECRAREQLEDDELLARALQESLNVDYPPQHGSDSLFKPAPQSFPPGFRTCAGCNAEIGHGRFLSCMGGVWHPKCFLCNDCCLPITDYEFSMSSNRAYHISCYREKHNPKCDVCKNFIPSNSAGLIEYRAHPFWVQKYCPKHEHDDTPRCCSCERMEPNDLKYILLDDGRKLCLECLDSAIMDSRECQPLYLEIQNFFEGLNMKVEQQVPMLLVERQALNEAMEGEKIGHHHFAETRGLCLSEEQTVATILRRPRIRAGRRATDMITKPYRLTRHCEVTAILVLYGLPRLLTGSILAHEIMHAWLKLKGYPNLSPKVEEGICQVMAHMWLESELYSGSRNNDAPSSSSSLRSTSSASSKKGKRSDFEMKLGDFFKHQIETDTSSAYGDGFRLGNQAVLKYGLKSTLDHIHTTGNFPS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00552 524 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 183 - -
Car08g00552 524 MobiDBLite consensus disorder prediction 447 470 - -
Car08g00552 524 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 523 - -
Car08g00552 524 SMART lim_4 157 209 IPR001781 -
Car08g00552 524 PANTHER PROTEIN DA1-RELATED 2 1 523 IPR045218 -
Car08g00552 524 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Car08g00552 524 Gene3D Cysteine Rich Protein 154 231 - -
Car08g00552 524 CDD LIM_DA1 158 210 - -
Car08g00552 524 Pfam Protein DA1 307 518 IPR022087 -
Car08g00552 524 MobiDBLite consensus disorder prediction 447 464 - -
Car08g00552 524 MobiDBLite consensus disorder prediction 63 90 - -
Car08g00552 524 Pfam LIM domain 158 213 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00552 Car-Chr8 4651953 4656512 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car08g00552 DA1-like 1.5e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00552 - - gmx:100817969 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00552 08 4651953 4656512 Car07g01505 07 14741321 14746392 PCT