Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00551 ATGGGAATAGCAACACCACCATTTCcttcttcttcttcttcttcttcttcCATTATTCATCACTTCAAGAAGACAGTAACATTACTACTACATCATAACCAGATTAGCTTCAATTGTTCAAATTCTATGTCCCAAGATTATCATCATCACCAAGGAATCTTCCAATTTTCCAATGGATTCGAGAGATCATCGTCGTCGTCGCAACAGATCCAAAGAGACAAAGTGAGAGGGTTTCAACAACAAGAACTTGCTCGTCCTCCTGTTTATGAAACCGCCGGTATGTTGTCGGAGATGTTTAATTTCCCTGATGATTCTTCAACAGCTGAATTGTTGGAAAATGCAActtttcgttcttcgtcttcttcttcAGCCTCGAGGcaccaacaacaacaacaacaaccacaaacgtcaacaattacaggtaattcagaaaacaacaacaattggtatggtaaccataccaacaaccaacaacaacaacaacatcaacatcaaATTTCAAGCATTAATGCAGCAGCAGCTGATTCAGCTGCTGCTGCCATGCATCTTTTTCTCATGAACCCTTCTCATATGCATCAAACAAGATCTTCATCTTCTCCTCCAACTCCACATCCTCAACAAACTCTCCACATGTTTCCAAATTCTGGTTTTGGACAATTCACATGGGGTGGTGGTACTACTCAAGAAGGAGGAGGTGGTGTGGAAGGTCTTTCATTATCACTATGTTCTTCATTGGAAGTTGCAAAAGCTGATCAAGAATTAAGATCTTTGTATTACAATAATAATCAAGTTGGTGAAGGAGGACcatcttcttcatatcagtacaaaaatcatcataatcatcatcaAGCATTAATGAATAATTTGCATTTACAACAAGGAGGAGGGACCAATAATATTATTATTGGATACAATAATAACTACAACCAGCATCATCAAGGATTGTCATCCTTAAATGTTGTGAGAAATTCAAAATATATGAAAGCAGCACAAGAATTGTTTCAAGAGTTTTGCAGTGTTGGTGGTGGGAGGAGTAATCATCAGTTTATTATTAAGAACAACAAGTTGAATTCAAACCCTAATAATGGTGATCATCCTTCTAATTCATCTTCATCAAAAGACACTCCTCTTCCTCCTTTGTCAGCTTCTGATAGAATTGAACATCAAAGAAGGAAGGTCAAACTTCTTTCCATGCTTGATGAGGTGGACAGAAGGTACAATAACTACTGTGAACAAATGCAAATGGTGGTGAACTCATTTGATGTAATGATGGGTTTTGGAGCAGCAATTCCATACACAGCACTTGCACAGAAAGCGATGTCTCGTCATTTCAGGTGTTTAAAGGATGCAATAACAGCACAGGTGAAGCATAGTAGTGAGGTTCTaggagagaaagaaggaggaggaggaggaggGAATTCATTAGGAGCAGGTTTGACAAAAGGAGAGACCCCTAGACTTAAGGCACTTGAACAAAGTTTAAGACAGCAGAGAGCTTTTAATCAAATTGGGATGAATATGGAACAGGAAGCTTGGAGACCTCAAAGAGGATTGCCTGAACGTTCTGTCAACATTTTGAGAGCTTGGCTTTTTGAGCATTTTCTACACCCGTATCCAAGTGATGCAGATAAGCATCTTTTGGCACGACAAACTGGGCTATCGAGAAATCAGGTATCAAATTGGTTCATAAATGCAAGAGTTCGGTTGTGGAAGCCAATGGTAGAAGAAATGTATCAACAAGAACTTAATGAAGCAGAGTGTGGAGATAAACAAATATCacaagaaaacaacaacaacaacaacaacagtgttggtgaccaaacaccaccacaacaaccacctacgacaccaacaacaaaaaTATCCGAAGAAAACGACCAAGCAATTCAATCCAATTCTATCACCGCCATTAACACCACCGTTTCTGAGGTGGCTCCACCGTTCGATTCAGACATGTCCCCACAGAGATCAATGGCTATGGATGACACGTGTCGATATGGAAGCTTAGTTGCAGAAGATTATGAAACAGCCTCTGACATTGGATCATCAACTCTTATCAGATTTGGGTCCACTTCTGGTGACGTGTCACTTACTTTAGGGTTACGCCACGCTGGCAACATGCCTGATAATAAAACTACTACTTTCTCTATTAGAGACTTTGGACCCATTTAA 2172 0.3393 MGIATPPFPSSSSSSSSIIHHFKKTVTLLLHHNQISFNCSNSMSQDYHHHQGIFQFSNGFERSSSSSQQIQRDKVRGFQQQELARPPVYETAGMLSEMFNFPDDSSTAELLENATFRSSSSSSASRHQQQQQQPQTSTITGNSENNNNWYGNHTNNQQQQQHQHQISSINAAAADSAAAAMHLFLMNPSHMHQTRSSSSPPTPHPQQTLHMFPNSGFGQFTWGGGTTQEGGGGVEGLSLSLCSSLEVAKADQELRSLYYNNNQVGEGGPSSSYQYKNHHNHHQALMNNLHLQQGGGTNNIIIGYNNNYNQHHQGLSSLNVVRNSKYMKAAQELFQEFCSVGGGRSNHQFIIKNNKLNSNPNNGDHPSNSSSSKDTPLPPLSASDRIEHQRRKVKLLSMLDEVDRRYNNYCEQMQMVVNSFDVMMGFGAAIPYTALAQKAMSRHFRCLKDAITAQVKHSSEVLGEKEGGGGGGNSLGAGLTKGETPRLKALEQSLRQQRAFNQIGMNMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELNEAECGDKQISQENNNNNNNSVGDQTPPQQPPTTPTTKISEENDQAIQSNSITAINTTVSEVAPPFDSDMSPQRSMAMDDTCRYGSLVAEDYETASDIGSSTLIRFGSTSGDVSLTLGLRHAGNMPDNKTTTFSIRDFGPI 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00551 723 Pfam Associated with HOX 320 452 IPR006563 -
Car08g00551 723 MobiDBLite consensus disorder prediction 353 386 - -
Car08g00551 723 ProSiteProfiles 'Homeobox' domain profile. 509 572 IPR001356 GO:0003677
Car08g00551 723 MobiDBLite consensus disorder prediction 591 609 - -
Car08g00551 723 Pfam Homeobox KN domain 529 568 IPR008422 GO:0003677|GO:0006355
Car08g00551 723 MobiDBLite consensus disorder prediction 353 378 - -
Car08g00551 723 MobiDBLite consensus disorder prediction 114 171 - -
Car08g00551 723 SMART prehox3 315 453 IPR006563 -
Car08g00551 723 SMART HOX_1 512 576 IPR001356 GO:0003677
Car08g00551 723 CDD homeodomain 512 573 IPR001356 GO:0003677
Car08g00551 723 Gene3D - 515 577 - -
Car08g00551 723 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 710 - -
Car08g00551 723 SUPERFAMILY Homeodomain-like 514 579 IPR009057 -
Car08g00551 723 MobiDBLite consensus disorder prediction 591 620 - -
Car08g00551 723 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 84 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00551 Car-Chr8 4619407 4625622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00551 315 721 Homeobox Transcription Factor Family AT2G23760 51.380 3.20e-132 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Car08g00551 POX 5.7e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00551 - - gmx:100777243 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00551 08 4619407 4625622 Car07g01504 07 14692025 14699608 PCT
Car08g00551 08 4619407 4625622 Car06g00502 06 5063130 5066876 PCT