Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00550 ATGGAAGTACTTCCTTGTTCTGGTGTTCAGTATGCTGGGGAATCTGATTGCCCTCAACGAGGTTCAGGAACAGCTTTTGTCTACCAGGAAGAACCTACTTGTCCTGAAAATGGTGATCAAGCTAAGTTGGCAGATGGTCAAGTGATTGAATCATTGCATAAGATGCAAGGACCAGAGTTAACACATATGGTTTGTCAATGCAATGGAGCTTCATGTGGTGACTGTCAAGTGAATGAGCAAAAGGAATACTGCGGTTTCCATGATTTTGAAGAAGACATGATAAACGAACGTTACATAACCTCTGAGAATGCTCTCTCTGTTGTTGATACAATTGAAAGCGAATCACCAAACAACGGTAGAGAAGGAGGGGACTTGTCATTTTCTGAACCCAAGTGGCTAGAGGGCGATGGATCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGTATCCGATGTGCAAGGGCTGACTGGCCATTATCAACTTTGAAAGCAAAACCAACTCACGACCGAAAGAAATATTTTGTCATTTTTTTTCCACACACAAAGATTTATTCTTGGGCAGATATGCTGCTTGTTAGGTCAATCGATGAGTTTCCCCATCCTGTTGCATACAAGACTCATCAGGTAGGACTGAAATTGGTAAAGGACTTAACAGCTGCTCGGCGGTTTATAATGCAAAAGCTAGTTGTTGGCATGCTGAACATTGTTGATCAATTTCATCTTAATGCTTTAATAGAAGTTGTCCGTGATGTGAAGGTCTGGAAGGAATTCGCCATGGAGGCTTCTCGCTGTAATGGTTATTCTGATTTTGGAAGAATGCTTCTAAAGATACACAATAGCATCCTGCAGCACTACATAAATACTAACTGGTTACAGCAATCTTCTACCTCTTGGGTTGAACGATGTCAGAGTGCAAATAGTGCTGAATCAGTAGAGCTGCTTAAGGAGGAATTGTTTGATTCTATTTTGTGGAATAATGTCAACAATCTCTGGGATTCACCAGTGCAACCAATATTAGGTTCTGAATGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTTCGCCGTCACCTTCCTTGTCTAGCAGCAAAGACACTCACCGGCAGATTTCTGATGTTTCGTACCAAACAAACCTTCAGGTTTCTAGAAAAAGGCCTAAACTTGAAATCCGTCGTGCGGATTCACATGCTTCACAAGGGGTGTTCAAGGGTCCAGATCACGCTATTGCTCTTGAGACTGACCCTGGTTTCTTTAAGAATCGGGACACATCGAGCACATTAGCTTCTGAGACTTATAAACATGAAAATATTAGGAAGGTGTCTATGATAAATGATTTGCCAAGTAAATGGAATGATATTGTAGTTGAGGCTTCTGATTCTGATTTCTTGCATGCTAAAGAAAATGAATCAACACCTATAAATGAAATGGCTGCTGTAAAATCTGTGGATCCTGGTAGTAAGAATCGACAATGTATAGCTTATATTGAAGCCAAGGGAAGACAGTGCGTGAGATGGGCAAATGAAGGGGACGTGTACTGCTGTGTGCATTTATCCTCTCGTTTTTTGGGCAGCTCAGAAAAAGCTGAAAAACAGGTTCAATTCGATACTCCTATGTGTGATGGTACAACTGTTCTGGGTACTAAATGTAAGCATCATGCGCTACAGGGATCTTTATACTGCAAGAAACACCGGCCCCTCGCTGAAACTGAACAGATTTCAAGTTTACCCCAAATTACAATAAAGAGAAAACATGAAGAAAATTATACTGGTTCAGAGGACATTTTCTGCCGAGACATGGTATTGGTAAATAATGAAGGTCCACTGCAAGTGGATCCAGTGCCATCCATTGCTGGTGATTCCTTACACGGAGAAAGCACTTTGTCTGAGAAGGGTCATGTTGCAATGGAGGCTCGGAACTGTTTAGGTTCTCCTCCCTTTGATAATATGAATCCTTGTATGGAAGCTCCTAAACGCTATTCCTTGTACTGTGAAGTCCACCTTCCAAGCTGGCTTAAACGAGCGAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCTCAGAACTTTTGATGGGCTGCAACTCACGTGAGCAAAAGGTGCATCTACATAACGCATGTGAGCTTTTTTATAGGCTATTCAAAAGCATTTTATCACTAAGAAACCCGGTTCCTAAGGAAGTCCAATTCCAATGGGCTTTGACTGAAGCCTCTAAAGATACTGGTGTTGGAGAATTTTTTACAAAGTTGGTTCATAGTGAAAAAACAAGAATCAAATTGATGTGGGGATTCAATGATGACATGGATGTATCCTCTGTAATAATAGAAGAACAACCTCTCTTGCCACCGACAATTAATCATAGCTTTGATAATGAAAATGCCATTAAGTGTAAGATATGCTCTGTGCAATTTCCTGATGACCAAGCACTCGGTAACCATTGGATGGAAAGTCATAAAAAGGAAGCACAGTGGCTGTTTAGAGGCTATGCATGTGCAATTTGTCTGGATTCTTTTACTAACAAGAAACTATTGGAAACCCATGTTCAGGAGAGACATCATGTGCAATTTGTTGAACAATGCATGCTTCTCCAATGCATTCCTTGTGGAAGTCATTTTGGAAATTCTGAACAATTGTGGCAGCATGTTTTATCAGCTCATCATGTTGATTTTAAACCATCAAAAGCTCCTGAACAGCAAACTTTCTCTACTGGCAAAGGTTCACCTGTAAAACACGACCAGGGGAATTCAGCATCTTTGGAAAATAATTCTGAGAACCCAGGTGTTCTGCGGAAGTATTTTTGCAAGTTCTGTGGGTTGAAATTTGATTTACTACCTGATCTAGGACGACATCACCAAGCTGCTCATATGGGGCCAAATCTGGTTAGCAACCGCCCTGCTAAGAGAGGAGTTCGCTATTATGCATATAAATTAAAATCTGGCAGACTAAGCCGTCCTAGATTTAAAAAAAGTTTGGCAGCAGCATCATTGAGGATGAGAAGTAAAGCTAACGCCAATTTAAAGCGATGCATTCAGGCAACAAAGTCAATTGGTGTGGAAGAAACAACTGCGCAACCACATGTAATTGAAACAGAAAATATTAGTGGATTGGCAGAACATCAATGCTCAGCTGTTGCTAAAGTTTTGTTTTCAGAAATTCAGAAAACTAAACCTCGGCCTAACAATCTTGATATTTTATCAATTGCTCGCGTTGCTTGCTGCAAAGTTAATCTTGTAGCCTCACTGGAAGAGAAGTTTGGAGTTCTTCCGGAAAAGATCTATTTAAAGGCAGCAAAACTTTGCAGCGACCATAATGTTGTTGTGAAATGGCACCATGGGGGTTTTGTTTGTCCCAGAAGTTGTAACACATCGAAGGATCGAGCCTTGCACTCTCCTTTAGCATCTCTTCCTAATGGTTTTGTAATGCAAAATTCTGTAAAGTTGTCTGATCCTGCAAGTGATGAGTGGGAGGTCGATGAGTTTCACTGCATAATTAATTCACAAAGTTTAAAATTAGGTTCACTGCAAAGAGCTATAGTAATGTGTGATGACATTAGCTTTGGGAAGGAGACAGTTCCTATTATTTGTGTAGTAGATCAAGAACTTCTGCATTCACTAAATGCGCATGGGTCTAATGAACAAGATAAAATCTTTCTTAAACTTTGGGAGAGCTTCTCCTATGTTACAAAGCCAATAATTGATGAATCCCTTAGTCTTGACTCAGAGAGTCCTCAATTGGGATGTGCCTGCTCATATCCTACCTGCTGTCCTGAGACATGTGATCATGTATACCTTTTTGGAAATGACTATGTTGATGCAAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGTGAACGGTAGAATGATTTTGGAGGAAGGTTACCTTGTCTATGAGTGTAGCCATATGTGCAGATGCAATAAATCCTGTCCAAACAGAATATTGCAAAATGGAGTACGAGTCAAATTGGAAGTCTTTAGAACAGCGAAAAAGGGATGGGCAGTAAGGGCAGGGGAAGCTATTCTACGCGGAACATTTGTGTGTGAGTACATAGGAGAGGTTTTAGATGTGCAGGAGGCACAAAACCGGCGTGAAAGATATGGCACAGGGAATTGCGGTTACTTCTATGATGTTGATGCTCGTGTTAATGATATGAGCAGATTGATTGAAGAACAGACTCGATATGTGATTGATGCTACGAAGTATGGAAATGTGTCGAGGTTCATCAATCATAGCTGCTCGCCGAATCTTGTGAGTCACCAAGTTGTCATAGAGAGCATGGATTGTGAGCGTACACACATTGGTTTTTATGCAAGTCGAGATATTGTTCTGGGTGAAGAGCTGACATATGACTTTCACTATGAGCTTGTGCCTGAAGAAGGAACTCCTTGTTTGTGTGAATCATCAAAATGTAGGGGACGCCTTCACTAG 4449 0.4102 MEVLPCSGVQYAGESDCPQRGSGTAFVYQEEPTCPENGDQAKLADGQVIESLHKMQGPELTHMVCQCNGASCGDCQVNEQKEYCGFHDFEEDMINERYITSENALSVVDTIESESPNNGREGGDLSFSEPKWLEGDGSVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHDRKKYFVIFFPHTKIYSWADMLLVRSIDEFPHPVAYKTHQVGLKLVKDLTAARRFIMQKLVVGMLNIVDQFHLNALIEVVRDVKVWKEFAMEASRCNGYSDFGRMLLKIHNSILQHYINTNWLQQSSTSWVERCQSANSAESVELLKEELFDSILWNNVNNLWDSPVQPILGSEWKTWKHDVMKWFSPSPSLSSSKDTHRQISDVSYQTNLQVSRKRPKLEIRRADSHASQGVFKGPDHAIALETDPGFFKNRDTSSTLASETYKHENIRKVSMINDLPSKWNDIVVEASDSDFLHAKENESTPINEMAAVKSVDPGSKNRQCIAYIEAKGRQCVRWANEGDVYCCVHLSSRFLGSSEKAEKQVQFDTPMCDGTTVLGTKCKHHALQGSLYCKKHRPLAETEQISSLPQITIKRKHEENYTGSEDIFCRDMVLVNNEGPLQVDPVPSIAGDSLHGESTLSEKGHVAMEARNCLGSPPFDNMNPCMEAPKRYSLYCEVHLPSWLKRARNGKSRIVSKEVFSELLMGCNSREQKVHLHNACELFYRLFKSILSLRNPVPKEVQFQWALTEASKDTGVGEFFTKLVHSEKTRIKLMWGFNDDMDVSSVIIEEQPLLPPTINHSFDNENAIKCKICSVQFPDDQALGNHWMESHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNSEQLWQHVLSAHHVDFKPSKAPEQQTFSTGKGSPVKHDQGNSASLENNSENPGVLRKYFCKFCGLKFDLLPDLGRHHQAAHMGPNLVSNRPAKRGVRYYAYKLKSGRLSRPRFKKSLAAASLRMRSKANANLKRCIQATKSIGVEETTAQPHVIETENISGLAEHQCSAVAKVLFSEIQKTKPRPNNLDILSIARVACCKVNLVASLEEKFGVLPEKIYLKAAKLCSDHNVVVKWHHGGFVCPRSCNTSKDRALHSPLASLPNGFVMQNSVKLSDPASDEWEVDEFHCIINSQSLKLGSLQRAIVMCDDISFGKETVPIICVVDQELLHSLNAHGSNEQDKIFLKLWESFSYVTKPIIDESLSLDSESPQLGCACSYPTCCPETCDHVYLFGNDYVDAKDIFGKPMRGRFPYDVNGRMILEEGYLVYECSHMCRCNKSCPNRILQNGVRVKLEVFRTAKKGWAVRAGEAILRGTFVCEYIGEVLDVQEAQNRRERYGTGNCGYFYDVDARVNDMSRLIEEQTRYVIDATKYGNVSRFINHSCSPNLVSHQVVIESMDCERTHIGFYASRDIVLGEELTYDFHYELVPEEGTPCLCESSKCRGRLH 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00550 1482 MobiDBLite consensus disorder prediction 897 926 - -
Car08g00550 1482 SMART preset_2 1184 1311 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car08g00550 1482 SMART set_7 1327 1465 IPR001214 GO:0005515
Car08g00550 1482 ProSitePatterns Zinc finger C2H2 type domain signature. 800 821 IPR013087 -
Car08g00550 1482 ProSiteProfiles Zinc finger C2H2 type domain profile. 866 895 IPR013087 -
Car08g00550 1482 SUPERFAMILY SET domain 1176 1472 IPR046341 -
Car08g00550 1482 Gene3D Classic Zinc Finger 792 864 - -
Car08g00550 1482 ProSiteProfiles Pre-SET domain profile. 1248 1324 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car08g00550 1482 SMART c2h2final6 832 855 IPR013087 -
Car08g00550 1482 SMART c2h2final6 798 821 IPR013087 -
Car08g00550 1482 SMART c2h2final6 935 958 IPR013087 -
Car08g00550 1482 SMART c2h2final6 866 889 IPR013087 -
Car08g00550 1482 ProSiteProfiles Zinc finger C2H2 type domain profile. 832 855 IPR013087 -
Car08g00550 1482 Pfam Zinc finger C2H2-type, 3 repeats 834 959 IPR040689 -
Car08g00550 1482 Pfam SET domain 1338 1457 IPR001214 GO:0005515
Car08g00550 1482 ProSiteProfiles Post-SET domain profile. 1466 1482 IPR003616 -
Car08g00550 1482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1482 - -
Car08g00550 1482 MobiDBLite consensus disorder prediction 898 926 - -
Car08g00550 1482 ProSiteProfiles Zinc finger C2H2 type domain profile. 935 963 IPR013087 -
Car08g00550 1482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1482 - -
Car08g00550 1482 Pfam Pre-SET motif 1187 1319 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car08g00550 1482 ProSitePatterns Zinc finger C2H2 type domain signature. 868 890 IPR013087 -
Car08g00550 1482 ProSitePatterns Zinc finger C2H2 type domain signature. 937 958 IPR013087 -
Car08g00550 1482 Gene3D SET domain 1165 1463 IPR046341 -
Car08g00550 1482 ProSiteProfiles SET domain profile. 1327 1459 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00550 Car-Chr8 4603837 4616571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00550 88 1481 C2H2 Transcription Factor Family AT2G23740 50.706 0.0 1378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car08g00550 Pre-SET 9.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00550 - - gmx:100786757 2397.08