Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00540 ATGTTTTTTCATCAAAAGGTAAACTTCACAATCACGATCATAGCAATCTTCTTATTGAACACAACAAGAGCACAGAACAACACAATTTGTGATAACCGTTGTGGAGATGAGATTCTTCAATACCCTTTTGGATTCTCTGAAGGTTGTGGAATCAAACTAAAATGTTTCCAAAACAAAGTCCAAGTTGGTGAATTTCTGATTCAGAACTTAACGAAAAACAGCATATTCATCTACCTTCCGGCAAAATGCAACCGTAGCATGGAAACTATTCAACCACTTTTCAGTGAAAACTTTGCTCCTACAAGGAATAACAGTTTTCTAGTTCAAGGTTGTTCAGTTCCACTTGGTGGTTGTGTTATTCCAGCTTCAAGTTTTTTTGGAAATCAAATTGAAGTTGAAAGTTGTGACAGAAAAAGTAGTAATATAAGTTGTTTTTCTCAGAAACAACGTGAAGAAGGAGAAAGAGATGTTTTGACTTATGAGGAATTGAATCAAACTAAGTGTAACTATTTGTTCTCAGCTGTTGCTGTTGAACAGAACAAAGAGATTTCTTTGCAATTTCAAGCTGTTGAATTGGGGTGGTGGCTTCAAGGGTTGTGTCAATGTTCTTCCAATGCTACTTGTTCCACAGTGAATCTACAAGGAGACAGTTTGGGGTTCCGGTGTCAGTGTTTTGATGGTTTCATCGGAGATGGTTTTGCTAATGGCACCGGTTGCCGGAAAGCTCCAAGTTGCAGTGCTTCAACACTAACATCCGGGGGATGTGGGAATGCAACCAAAATTGGTGTTGTCATTGGAGTGGCTGTAACCGGAGTTGTCATCGTGGCTGCTCTCATTCTTCTATGCTACTGTGCCAGGCGTCGTTTTACTTGGTTGAGAAAACATACCAGAGTAAAGCGCCTACTCCGCGAAGCTGCAGGCAACTCTACTGTGCCTCTCTACCCTTACAGAGACATAGAAAAAGCCACAAATTCTTTCTCTGATAAACAGAGGCTGGGAACTGGGGCTTTCGGAACAGTCTATGCCGGAAAACTTCACAATGATGACTGGGTTGCAATAAAGAAGATAAGGCATAGAGACACCAACAGTGTTGATCAAATCATGAATGAGATCAAGCTCCTTTCTTCGGTGAGTCACCCGAATTTGGTTCGCCTCTTAGGTTGCTGCATTGAGGAGGGAGAGCAAATACTTGTTTATGAATTTATGCCGAATGGAACACTGTCTCAGCATTTGCAAAGAGAGAGGGGTAAAGGTCTTCCGTGGACAATACGACTCACCATCGCTTCTGAAACTGCTAATGCTATAGCTTATCTCCATTCTGCAATTTATCCCCCAATTTACCACAGAGACATAAAATCCAGTAATATACTCTTGGATTATAGCTTTAAATCTAAAGTAGCTGATTTTGGGCTTTCTAGGCTTGGCATGATAGAAACATCACATATTTCAACTGCTCCACAGGGAACTCCAGGTTATGTGGATCCCCAATACCATCAGAACTTCCATCTTTCTGATAAAAGTGATGTATACAGCTTCGGAGTGGTTTTGGTAGAGATAATAACTGCCATGAAAGTGGTTGATTTTGGAAGACCACAGAGTGAGATTAATTTAGCTGCACTTGCTGTTGATAGGATTAGGAGAGGTTCTATAGATGAGATTGTAGATCCCTTCCTTGAACCACATAGCGATGCTTGGACTCTATATTCCATTCATAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGCGACACGAGGCCAACTATGATGGAAGCAGCTGAGGAGCTGGAGTATATCAGACGCCGTGCATGGGCAACTATGGAGGAAACCATATGCTTAGGTTCATCGATTGGATCTACAAGTTCATCGCCTCGCAATGGAAGTGAGATGTCAGTGAGTGGTATTAAGTTGAAGAGAGTAGGGCAAGAGAGTGAGGGATTGATTATTCCACCCGTGGACGGGAGCTTGTTGCAATCTGTGGAGGTGAAAGACAGCTCCCCTGTATCAGTGCATGATCCTTGGTCAAGTGGACAGAGCTCGCCTTCAACAAACAGCTTGTTGGGAAATGTCATTCGGTGA 2085 0.4216 MFFHQKVNFTITIIAIFLLNTTRAQNNTICDNRCGDEILQYPFGFSEGCGIKLKCFQNKVQVGEFLIQNLTKNSIFIYLPAKCNRSMETIQPLFSENFAPTRNNSFLVQGCSVPLGGCVIPASSFFGNQIEVESCDRKSSNISCFSQKQREEGERDVLTYEELNQTKCNYLFSAVAVEQNKEISLQFQAVELGWWLQGLCQCSSNATCSTVNLQGDSLGFRCQCFDGFIGDGFANGTGCRKAPSCSASTLTSGGCGNATKIGVVIGVAVTGVVIVAALILLCYCARRRFTWLRKHTRVKRLLREAAGNSTVPLYPYRDIEKATNSFSDKQRLGTGAFGTVYAGKLHNDDWVAIKKIRHRDTNSVDQIMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEFMPNGTLSQHLQRERGKGLPWTIRLTIASETANAIAYLHSAIYPPIYHRDIKSSNILLDYSFKSKVADFGLSRLGMIETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFGRPQSEINLAALAVDRIRRGSIDEIVDPFLEPHSDAWTLYSIHKVAELAFRCLAFHSDTRPTMMEAAEELEYIRRRAWATMEETICLGSSIGSTSSSPRNGSEMSVSGIKLKRVGQESEGLIIPPVDGSLLQSVEVKDSSPVSVHDPWSSGQSSPSTNSLLGNVIR 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00540 694 SMART serkin_6 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00540 694 MobiDBLite consensus disorder prediction 669 694 - -
Car08g00540 694 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 673 IPR045274 GO:0007166
Car08g00540 694 ProSiteProfiles Protein kinase domain profile. 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00540 694 Pfam Protein kinase domain 327 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00540 694 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 24 673 - -
Car08g00540 694 Gene3D Phosphorylase Kinase; domain 1 288 401 - -
Car08g00540 694 ProSitePatterns Protein kinases ATP-binding region signature. 332 355 IPR017441 GO:0005524
Car08g00540 694 SUPERFAMILY Protein kinase-like (PK-like) 307 600 IPR011009 -
Car08g00540 694 Gene3D Transferase(Phosphotransferase) domain 1 402 615 - -
Car08g00540 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00540 Car-Chr8 4549823 4553648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00540 11 694 Receptor kinase-like Gene Family AT2G23450 56.835 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Car08g00540 Pkinase 8.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00540 - - gmx:100779130 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00540 08 4549823 4553648 Car07g01492 07 14422140 14427177 PCT