Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00521 ATGGTGGTAGAAACAAAACCACACTTTCAAACAATAAAAAACATCATGGAACTGAACTTGGATTTGACTTTGTCCTCTGTCCCCAAAACCGTTTCTTTTTTCCTCAACGGCGTTTCTCAAACCAAAGACATTTCTCACAAACTTTCCATGCTTGATGATTTAATTCAGAGATTTGAAGAAGAACTCAAAAAGGTGGTAGCTTTCAAACGTGAACTCCCTCTTTGCATTCTCCTCGTAAACGATGCTATAGTAAGATTGAAAGAAGAAAAAGTTCGGTTAATGGGAATTAAAGATCTAAATTATGAAGGAAATGAAAATGGAAATGGAAAAGGATCCTTAACAGTGGTAAAAGAAAACTGTGATGATAATAAGAAGAATTGGTTGAGTTCATTTCAGCTATGGAACACTGAAAAAAAATCGAAGAATGAAGATGATAATGATAAGAGCAATGGTGAAGGGGTATTTGGGGGATTTAATGGAAATTCGTGTGTGTCATCGAAAGGGGCTACTCAAGTTCCAAGCTTTAGTTTAGTGAGTACTCCAGTGTCTGAAGTGAGTAATGGAAATTTCAAGAgtggtggtggtggtggtggtagtTCTGCTTCTTCTTTGCTACAGAATAATCAACCTCAGCCACCACAACCTTTGCAGCAGAATCCTAGGAAACAAAGGCGATGCTGGTCGTCGGAGCTTCATCGTCGATTTGTTGATGCTCTTCAACAACTTGGTGGAGCACATGCCACTCCTAAACAAATTAGAGAGAAGATGCAAGTGGATGGATTAACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATGTTAGAAGATTCCCAATTTCTTCAATTGAGGAAGCTAATAAGCTAGCCTTATATATGGCTCAAGATCAATGTGGAGGAGATATATCAAATTCAAAGGGAAGCTTATCAGAGTCTGTTTCACCACAGGGTCCTTTAACTCCTCTTCTCATTGGAGGATCTGTTGCAAGAAACAGTGTTGACGCAGAAGATGAACAATCAGATTGCAGAAATTGGAAAAGTGAGATCCAACATGAAGCTGATAATCACAGCCTCTAA 1083 0.3749 MVVETKPHFQTIKNIMELNLDLTLSSVPKTVSFFLNGVSQTKDISHKLSMLDDLIQRFEEELKKVVAFKRELPLCILLVNDAIVRLKEEKVRLMGIKDLNYEGNENGNGKGSLTVVKENCDDNKKNWLSSFQLWNTEKKSKNEDDNDKSNGEGVFGGFNGNSCVSSKGATQVPSFSLVSTPVSEVSNGNFKSGGGGGGSSASSLLQNNQPQPPQPLQQNPRKQRRCWSSELHRRFVDALQQLGGAHATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPISSIEEANKLALYMAQDQCGGDISNSKGSLSESVSPQGPLTPLLIGGSVARNSVDAEDEQSDCRNWKSEIQHEADNHSL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00521 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 219 278 IPR017930 -
Car08g00521 360 SUPERFAMILY Homeodomain-like 220 279 IPR009057 -
Car08g00521 360 Coils Coil 51 71 - -
Car08g00521 360 MobiDBLite consensus disorder prediction 186 226 - -
Car08g00521 360 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 13 353 - -
Car08g00521 360 MobiDBLite consensus disorder prediction 305 326 - -
Car08g00521 360 MobiDBLite consensus disorder prediction 305 319 - -
Car08g00521 360 Gene3D - 219 280 - -
Car08g00521 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 13 353 IPR044787 GO:0003700|GO:0006355
Car08g00521 360 MobiDBLite consensus disorder prediction 186 224 - -
Car08g00521 360 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 222 276 IPR006447 GO:0003677
Car08g00521 360 Pfam Myb-like DNA-binding domain 224 274 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00521 Car-Chr8 4437689 4440171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00521 16 271 G2-like Transcription Factor Family AT4G37180 40.659 2.51e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Car08g00521 Myb_DNA-binding 5.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00521 - - gmx:100785723 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00521 08 4437689 4440171 Car08g00521 08 4437689 4440171 ECH