Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00519 ATGCTAAGGCAGCGAAGCAAAATAATTGTGCCACGACAACGACCCATCTCACTAAAATTCAAATCCTGGTACTGGAGGGTTGTGAATTCTAGATACTATTATAGCCTAAATATAACCTATGAAGGCACGTTGGTGAGTGAGAGAAAGAGAAAAGAGATCAGAAAAGATGACGTCATCATCAAATTCGCCTTGTGCGGCGTGCAAGGCTCAACGGCGAAAATGCACGCAAGAGTGCGTGTTCGCACCGTATTTTCCACCGGACAATCCTCAAAGCGTGACGACGCCGTGAAGTCGTTGGCATATGAGGCTGAGGCTCGGCTTAGGGATCCTGTTTACGGTTGCGTTGGGGTTATCTCTGTTCTACAACATAAGCTAAGACAAATCCAAGGTGAACTCAACGATGCTAAAAAAGAACTTGCAACTTATATTGGTCCTCAAGCACTTCATGGTGTTCCCACAAACATTATTCAACAACAACAACCTAATAACCCTTTTGTTAACTCTCTTTACCCTTATAATAATGGGAATGTTGCGGCGGCTGCACAGATGATGATTTGTGACTCTCAACCACCACCGTCTCAACATCCGATCATGGAAGCTCAGCAATTAGCTGCTGCTCTTGTTGAAAGAGAGCAACAAGAGATGTTAAGGAGTTTCGAACATCAACAACAGCAGCAAGAGTTTTTGAGGTTCAGTGGTGGGTTTGATGTGGATTCTGGTTCTTCCGGTGGTGGTTTCAACCAAATGTctcctgctgctgctgctgctgtggcttctAGCGATCAATTGTCTCCTTCTTTGACTTTGGGATCTTTTGATAATACTTATCACCACATGCAGCAAGTACAAGGAGAACCTCAACCTCATCATCATCCACTTCAGGCACATGCACAGCTACTTCTTCCACCTCAGCAGAAACAACTCTTGTCATTTCCTACTTGTTTGTCAAACAGTTTTCAGCTTAGGTTTTACCGTACGAATACAAATGGATAG 993 0.423 MLRQRSKIIVPRQRPISLKFKSWYWRVVNSRYYYSLNITYEGTLVSERKRKEIRKDDVIIKFALCGVQGSTAKMHARVRVRTVFSTGQSSKRDDAVKSLAYEAEARLRDPVYGCVGVISVLQHKLRQIQGELNDAKKELATYIGPQALHGVPTNIIQQQQPNNPFVNSLYPYNNGNVAAAAQMMICDSQPPPSQHPIMEAQQLAAALVEREQQEMLRSFEHQQQQQEFLRFSGGFDVDSGSSGGGFNQMSPAAAAAVASSDQLSPSLTLGSFDNTYHHMQQVQGEPQPHHHPLQAHAQLLLPPQQKQLLSFPTCLSNSFQLRFYRTNTNG 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00519 330 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 88 289 - -
Car08g00519 330 Pfam Lateral organ boundaries (LOB) domain 72 136 IPR004883 -
Car08g00519 330 Coils Coil 118 138 - -
Car08g00519 330 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 88 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00519 Car-Chr8 4415142 4419862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00519 73 260 AS2 family AT5G66870 40.594 3.25e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car08g00519 LOB 2.9e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00519 08 4415142 4419862 Car07g01467 07 14104146 14105024 PCT
Car07g01468 07 14108163 14110014 Car08g00519 08 4415142 4419862 PCT