Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00518 ATGACGTCATCGTCAAATTCGCCGTGTGCGGCGTGCAAGTCTCTACGGCGAAAATGCACTCGAGAGTGCGTGTTCGCACCGTATTTTCCACCGGACAATCCTCAAAGGTTCACATACGTTCACAAAGTTTTCGGTGCGAGCAATGTAACGAAGCTGCTCAACGAGCTTGACGCGACTCAGCGTGACGACGCCGTGAAGTCGTTGGCATATGAGGCCGAGGCTCGGTTTAGGGATCCTGTTTACGGTTGCGTTGGTCTTATCTCTCTTCTTCAACATAAGCTAAGACAAATCCAAGGTGAACTTAACAATGCTAAAAAGGAACTTGCAACTTATATTGGTCCTCAAGCACTTCAGGGTGTTCCCACAACCATTCTTCAACAACAACATCCTAATAACCATTTTGGTAACTCTCTTTACCCTTATAATAATGGGAATGTTCTGACTACTGTTACTGCGGCTACACAGATGGTGATTAGTGACCTTCAACCACCACCGTCTCAACATCCAATCTTGGAAGCTCAGCAATTAGCTGCTGCTGTTGTTGCAAGAGAGCAACAAGAGATGTTTAGAAGTTTCGAACATCAACAACAGCAGCAAGAGTTTTTGAGGTTCAGTGGTGGACTTGATGTGGATTCTGTTTCTTCTGGTGGTGATTTCAACCATGTGTCCCCTGTTGTTGTTGCTTCTACGGATCAATTGTCTCCTTCTTTGGCGTTGGGATCTTTCGATAATACTTATCACCACATGCAACAACCTCAACAAGGACATGGAGAACCACATCATCAACATCTTACACTTCAGGCACAGCTTCTTCTTCCACCTCAGCAGAAGCAAGTGCAGACACAAACGCAACATTCATCTCTCACACATCACCAACAACAGACGGAAAGCGAGGAGTGTAGGAGTGTTGGTCCTTCTTGTTGA 924 0.4567 MTSSSNSPCAACKSLRRKCTRECVFAPYFPPDNPQRFTYVHKVFGASNVTKLLNELDATQRDDAVKSLAYEAEARFRDPVYGCVGLISLLQHKLRQIQGELNNAKKELATYIGPQALQGVPTTILQQQHPNNHFGNSLYPYNNGNVLTTVTAATQMVISDLQPPPSQHPILEAQQLAAAVVAREQQEMFRSFEHQQQQQEFLRFSGGLDVDSVSSGGDFNHVSPVVVASTDQLSPSLALGSFDNTYHHMQQPQQGHGEPHHQHLTLQAQLLLPPQQKQVQTQTQHSSLTHHQQQTESEECRSVGPSC 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00518 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 283 - -
Car08g00518 307 Coils Coil 87 107 - -
Car08g00518 307 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Car08g00518 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 3 283 - -
Car08g00518 307 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Car08g00518 307 MobiDBLite consensus disorder prediction 274 307 - -
Car08g00518 307 MobiDBLite consensus disorder prediction 274 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00518 Car-Chr8 4401924 4405548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00518 3 247 AS2 family AT5G66870 49.077 9.40e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car08g00518 LOB 1.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00518 - - mtr:MTR_5g017950 395.586