Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00504 ATGGCTTCCTCCTCCTCCTCCCCACCAAAACCCATCGTCCTCTCACTCACAAAGAAACCCCAACCCATCCCTTGGACCCACCAAGAAACAATTAATCTCATCACAGCCTATCAAGAAAAATGGTACTCTCTCAAACGGGGCCCACTCCGCGGCAGTCAATGGGAAGAAGTCGCCGTTGTCGTCGCCGCTCGTTGCGGCTACGACTACAACCACCCTTCCAAATCCGCCCTCCAATGTCGTCACAAAATGGAAAAACTCCGCCAGCGTCACCGATCCGAAAAACACCGTCTCTCCGCCACTTCCTCCGCCGCATCTTCCCGCTCTTGGCAGTACTTCCGTTTGATGGACGATCTTGAACGCGGTCCTCTCCCTATCTCCGTCCGTCCAATTCCTCACAACCACAACATCGAAGATGAAGAATTAGACGACGATATCAATTGTGATAGGGGAAAGCGTAGTTTTAGGTCAAGGAGTATTAATAATATTCTAAATCAGAAACCAGAAGTAACAACAAGAAGAGAACGTGATGATGATGATGATGAAAGAGTGACGGCGAAGGGGTTGACGGCGGAGTTAAGAGATTTTGCGGAGAGAATTATTGGATTGGAAAATATGAAGATGGAGATGATGAAGGAAACAGAAAGGTTTAGGTTGGAGATGGAGAATAAACGGATGCGTTTGATACTTGAATCACAGTGGAGGATTGTTGATTCCATTGGAAGGGCTTTTCGGTCTTCATAG 741 0.4764 MASSSSSPPKPIVLSLTKKPQPIPWTHQETINLITAYQEKWYSLKRGPLRGSQWEEVAVVVAARCGYDYNHPSKSALQCRHKMEKLRQRHRSEKHRLSATSSAASSRSWQYFRLMDDLERGPLPISVRPIPHNHNIEDEELDDDINCDRGKRSFRSRSINNILNQKPEVTTRRERDDDDDERVTAKGLTAELRDFAERIIGLENMKMEMMKETERFRLEMENKRMRLILESQWRIVDSIGRAFRSS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00504 246 Pfam Myb/SANT-like DNA-binding domain 24 118 IPR044822 -
Car08g00504 246 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 176 245 - -
Car08g00504 246 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 5 168 - -
Car08g00504 246 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 5 168 IPR044823 -
Car08g00504 246 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 176 245 IPR044823 -
Car08g00504 246 Gene3D - 25 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00504 Car-Chr8 4239705 4240844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00504 25 118 Trihelix Transcription Factor Family AT3G14180 31.915 1.71e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Car08g00504 Myb_DNA-bind_4 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00504 - - mtr:MTR_5g017500 333.954