Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00501 ATGTCgcaacggtcggtgccggcgccgtttttgacgaagacgtacgagatggtggatgatacggcgacggaggatgtgatatcatggagtgagagtggtgaaagttttgttgtgtggaaacatgcggattttgcaagggatttgcttccaaaatattttaaacacaacaacttctcaagctttgttcgccagctcaacacctatGGATTCCGAAAGGTCGTGCCAGACAAATGGGAATTCGCAAACGAACATTTCAAGCGAGACAACAAAGAGCTTCTCTTCTTAATCAAACGCCGCAAAGTCGTTCCCCAACCTTCGTCACACCCCCCGGAAGCCGTTAAAACCGGCGCCGAAGGCAACTCTCAATCAAACTCCGGCAGCGATGGCGTGGGGTCCACATCAACTTCCACCTCATCCTCCAATTCAAAGAACCCTGGATCAGTAGAAACAACAATTCCCCAAAGCGCGAATTTATCGAGCGAGAACGAGAAATTGAGAAAAGATAACGAAACATTGAGTTCAGAATTGGCACGTGCGAAAAAGCAGTGCGATGAGTTGGTGGGTTTTCTAAAGGACCGTTTAAACGTGGGTCCCGATCAAATCGATCGCATTTTGAAAGATGGTAGTTGTGAATTTGTTGAAAATGCGGTAGGTGAAGAAGTTGAAGGTGGTGGTGGTGGTAGAAGAGATTGTTTGAAACTGTTTGGTGTTTGGTTGAAAGAGGAAAATTTAACAGACAAAAACAAGAGAGCCCGTGAACAACAATTGGGCTTTGGTGGGCCTCGTCTTAAAGTCACAAAAACTGTTGTTGACTTTAGTGATGTCAATGTCATCAAGAGTGCCAAGATTTGCAACTGA 858 0.3462 MSQRSVPAPFLTKTYEMVDDTATEDVISWSESGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDKWEFANEHFKRDNKELLFLIKRRKVVPQPSSHPPEAVKTGAEGNSQSNSGSDGVGSTSTSTSSSNSKNPGSVETTIPQSANLSSENEKLRKDNETLSSELARAKKQCDELVGFLKDRLNVGPDQIDRILKDGSCEFVENAVGEEVEGGGGGRRDCLKLFGVWLKEENLTDKNKRAREQQLGFGGPRLKVTKTVVDFSDVNVIKSAKICN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00501 285 MobiDBLite consensus disorder prediction 103 170 - -
Car08g00501 285 Coils Coil 155 182 - -
Car08g00501 285 MobiDBLite consensus disorder prediction 116 160 - -
Car08g00501 285 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g00501 285 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 285 IPR027725 -
Car08g00501 285 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g00501 285 Gene3D - 2 100 IPR036388 -
Car08g00501 285 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g00501 285 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 285 - -
Car08g00501 285 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Car08g00501 285 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g00501 285 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g00501 285 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00501 Car-Chr8 4222227 4224175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00501 2 285 HSF AT4G36990 52.234 2.91e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car08g00501 HSF_DNA-bind 2.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00501 K09419 - gmx:100791543 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00501 08 4222227 4224175 Car08g00501 08 4222227 4224175 ECH
Car08g00501 08 4222227 4224175 Car07g01443 07 13740743 13746091 PCT