Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00495 ATGGAACAGCGAAAGCTTGTGGTTTTGGGTATTCCGTGGGATGTTGATACCGATGGATTGAAAGAATACATGAGCAAATATGGTGAACTAGAAGATTGCATTGTCATGAAGGAGCGTTCAACTGGGCGATCTCGTGGTTTTGGATATGTTACATTTGCTTCATTGGATGATGCCAAGGAAGTATTGTCCGGTGAACATGTTCTTGGTAATAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGAGCACCAGCCAAGAAAGTTACCAGAATTTTTGTGGCCAGAATTCCACAATCAGTGACCGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGCGAGATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAGATGCATCGTGGAATTGGTTTTATCACTTTTGCAAATGCAGAATCTGTGGAGAATTTGATGTCAGAAACCCATGAACTCGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAGGATGATGACGTTAAGCCAACTGGCAGAATTTCACAGGGAGGATATGGTGCATACAATGCATATATTTCTACAGCAACTAGATATGCAGCCCTTGGAGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAGGGGAGAGCCTCGTCGGAGAATTAGTAAAAAGATTTTTGTTGGTCGTTTACCCCCAGAAGCAAATTCTGACGATCTCCGTCAATATTTTGGGAGATTTGGCCATATAGAAGATGTTTACATTCCCAGAGATCCTAAGCGAACAGGTCATAGGGGTTTTGGATTTGTTACTTTTGCTGAAGAAGGTGTAGCAGATCGTGTCTCTCGAAGGCCTCATGAGATTCTTGGACATGAGGTTGCAATAGATTCGGCCACACCTGTTGACGATGCTGGGCCCAGTGGAAATTTTATGATGAACAATATGGAACCTTATGGGGGATATGGTGGTCCATTGCGAAGTTATGGAAGGATGTACGGTGGCTTAGACTACGATGATTGGGGTTATGGAGTTCCCAGTGGGAGGCCATCAAGAGCAGACTGGAGGTATAGACCATACTAA 1080 0.4398 MEQRKLVVLGIPWDVDTDGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASLDDAKEVLSGEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVTEATFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFANAESVENLMSETHELGGSAVVVDRATPKDDDVKPTGRISQGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSDDLRQYFGRFGHIEDVYIPRDPKRTGHRGFGFVTFAEEGVADRVSRRPHEILGHEVAIDSATPVDDAGPSGNFMMNNMEPYGGYGGPLRSYGRMYGGLDYDDWGYGVPSGRPSRADWRYRPY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00495 359 Gene3D - 220 304 IPR012677 -
Car08g00495 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Car08g00495 359 PANTHER OS01G0945800 PROTEIN 3 359 - -
Car08g00495 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 280 IPR000504 GO:0003723
Car08g00495 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Car08g00495 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Car08g00495 359 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Car08g00495 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Car08g00495 359 Gene3D - 1 84 IPR012677 -
Car08g00495 359 SUPERFAMILY RNA-binding domain, RBD 223 323 IPR035979 GO:0003676
Car08g00495 359 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 359 - -
Car08g00495 359 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Car08g00495 359 SMART rrm1_1 225 296 IPR000504 GO:0003723
Car08g00495 359 SMART rrm1_1 5 76 IPR000504 GO:0003723
Car08g00495 359 SMART rrm1_1 93 164 IPR000504 GO:0003723
Car08g00495 359 Gene3D - 85 175 IPR012677 -
Car08g00495 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00495 Car-Chr8 4156747 4162310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00495 6 273 Eukaryotic Initiation Factors Gene Family AT3G16380 24.638 2.79e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00495 K14411 - gmx:100795240 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00495 08 4156747 4162310 Car08g00495 08 4156747 4162310 ECH