Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00493 ATGGATAATAATGAGGACATATTGAAAACCTTAGAAACTACTGATGAAAGCACCATGAATCACATGATGACAATGATGATGCAAATGGAAAAGTTTCCTGAATCAACATATCAACCGTTTTATAACACCAACTCCAATAGCAACAATCTTAATCTCAATCTCACCAACACAGAAAATGAATACTGTTTGATGAATCCACCACTCTCTTCTTATCCTCTTCAACCAAACAATGCTTCATCATATTCATACCCTTCATTAGAGAAAAAGAGTTCATCAATGACAGCAATGAGAGAAATGATATTCAGAATGGCGGTTATGCAACCTATTCACATAGACCCAGAAACCATTAAACCACCAAAGAGAAAAAACGTGAAGATTTCAAAAGATCCACAGAGTGTAGCTGCAAGACACAGAAGAGAAAGAATAAGTGAGAAAATAAGGATCTTGCAGAGATTAGTTCCTGGTGGAACAAAAATGGATACAGCTTCTATGTTAGATGAAGCAATACATTATGTGAAGTTCTTGAAGAAACAAGTGCAGAGTCTTGAACAAGCTGGGGGAATTACTAGACCTAATTTGAATAATGTTGTTGGTAATTTCCCTTCAGGAATGTTTTCTAATTATGCTAATTTTAATTATTCTTCTTTGCTTAGAGGTTGTTCATCACCTTGTCAAATGGTGGCTCCTACTTCTAAACATATGCTAAGTTGA 711 0.3516 MDNNEDILKTLETTDESTMNHMMTMMMQMEKFPESTYQPFYNTNSNSNNLNLNLTNTENEYCLMNPPLSSYPLQPNNASSYSYPSLEKKSSSMTAMREMIFRMAVMQPIHIDPETIKPPKRKNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEQAGGITRPNLNNVVGNFPSGMFSNYANFNYSSLLRGCSSPCQMVAPTSKHMLS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00493 236 Pfam Helix-loop-helix DNA-binding domain 136 175 IPR011598 GO:0046983
Car08g00493 236 MobiDBLite consensus disorder prediction 113 137 - -
Car08g00493 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Car08g00493 236 Gene3D - 125 195 IPR036638 GO:0046983
Car08g00493 236 SMART finulus 132 181 IPR011598 GO:0046983
Car08g00493 236 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 17 230 IPR045843 GO:0003700|GO:0006355
Car08g00493 236 Coils Coil 165 185 - -
Car08g00493 236 CDD bHLH_AtIND_like 127 183 - -
Car08g00493 236 MobiDBLite consensus disorder prediction 114 137 - -
Car08g00493 236 PANTHER TRANSCRIPTION FACTOR HEC2 17 230 - -
Car08g00493 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 185 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00493 Car-Chr8 4132726 4133667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00493 29 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 58.152 2.74e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car08g00493 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00493 - - gmx:100800816 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00493 08 4132726 4133667 Car08g00493 08 4132726 4133667 ECH