Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00488 ATGAACGATCATTCGACCACCGCCGCCACAATGAACGACCAACTCTCCGACCAAACCTCAATATTCGGTCTCCGTTTGTGGGTTGTCCTCGGCGTCTCTGTCGGTGTCGTTATCGTTCTAATCCTCTTCTTTATCTCCATCTGGCTCGCTTTCAAACGTAACAACAATTCCAAAACCAAACCTTCAATCCCTGACGTCTCCAAAGAGATCCAAGAAATCAGACTCGAACTTCCATCTAACATAAACAACCCAACCACACAGCCCGACCCGTTTCCAGAACCCGACCCAATACCCTCCAACGAACACCTTGAAGACGAGACTCCGTTGAGTTACAATAGAATTCAGTTTGAAATTGGAAAAAATCATAGGATTTCTTACCCTGAACGTGCTTGTGGAAAGTCTTGTTCCAATGAACATAGTGGAGAATCTCGACCGTTGGATCAAGTTCCTACGGTGATTCCTCAAGTTTCTCATTTGGGTTGGGGTCATTGGTATACTCTTAGAGAGTTAGAGGATGCTACTAATGCATTTGCACCTGATAATGTTATTGGTGAAGGTGGTTATGGAATTGTTTATCATGGTATTTTGAAAGATAACACTCAAATTGCAATTAAGAATTTGCTCAATAATAGGGGACAAGCTGAAAGAGAGTTTAAGGTTGAAGTGGAAGCGATAGGACGAGTTCGTCATAAGAATTTAGTGAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGAATGCTAGTGTATGAGTATGTTGACAATGGTAACTTGGAGCAGTGGTTACATGGTGATGTTGGACCTTGTAGTCCTCTAACTTGGGAAATTCGAATGAATATTATTCTAGGAACGGCTAAAGGGTTGACTTATCTTCATGAAGGGTTAGAACCAAAAGTTGTTCACCGTGATATTAAATCGAGCAACATTTTGCTTAATAAGCAGTGGAACTCAAAGGTTTCTGATTTTGGTCTTGCAAAACTTCTTGGCCCTGAGAGCAGCTATATTACAACCCGTGTCATGGGTACATTTGGCTACGTTGCTCCTGAATATGCAAGTACTGGAATGTTGAACGAACGAAGTGATGTATATAGTTTTGGAATTCTTATTATGGAAGTGATTACAGGCAGGAATCCAGTCGATTATTGCCGTCCTCCAGAAGAGGTTTGGTTTATTTCTTTCACTATTGTGAACCTCGATGTTATTGAATGTTTATACTTGAATCTGAAAACTCATGATTTTCAGGTGAATTTAGTTGAGTGGCTCAAGAAGATGGTTGGTAACAGAAATCCAGAGGGAGTGTTGGATCCAAAGCTTCCTGAGAAACCAACCTCAAGGGCACTAAAGCGAGCACTTCTTGTAGCATTACGCTGCACTGACCCTAATGCACAAAAGCGGCCTAAAATGGGGCATGTAATACACATGCTTGAAGCCGAAGATACCCCTTACAAAGAGGATCGGAGAGTCAGAAGAGATGCGGGACATTCACCTACCCCCAGAATAGAAGATAGATCGAAAGAGGAGGCCAATGTATCTATTGATGATGGTATGCTTGAAAACGAGAAGTCTACCAATGAGACAGAATCAAACCATGAAATAGAGAAGCAATAA 1608 0.4179 MNDHSTTAATMNDQLSDQTSIFGLRLWVVLGVSVGVVIVLILFFISIWLAFKRNNNSKTKPSIPDVSKEIQEIRLELPSNINNPTTQPDPFPEPDPIPSNEHLEDETPLSYNRIQFEIGKNHRISYPERACGKSCSNEHSGESRPLDQVPTVIPQVSHLGWGHWYTLRELEDATNAFAPDNVIGEGGYGIVYHGILKDNTQIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPCSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLNKQWNSKVSDFGLAKLLGPESSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVITGRNPVDYCRPPEEVWFISFTIVNLDVIECLYLNLKTHDFQVNLVEWLKKMVGNRNPEGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDTPYKEDRRVRRDAGHSPTPRIEDRSKEEANVSIDDGMLENEKSTNETESNHEIEKQ 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00488 535 MobiDBLite consensus disorder prediction 79 104 - -
Car08g00488 535 PANTHER OS01G0323000 PROTEIN 413 525 - -
Car08g00488 535 PANTHER OS01G0323000 PROTEIN 5 392 - -
Car08g00488 535 Pfam Protein kinase domain 180 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00488 535 SMART serkin_6 177 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00488 535 PANTHER RECEPTOR-LIKE KINASE PLANT 5 392 - -
Car08g00488 535 PANTHER RECEPTOR-LIKE KINASE PLANT 413 525 - -
Car08g00488 535 ProSiteProfiles Protein kinase domain profile. 177 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00488 535 CDD STKc_IRAK 183 476 - -
Car08g00488 535 Gene3D Transferase(Phosphotransferase) domain 1 253 494 - -
Car08g00488 535 Gene3D Phosphorylase Kinase; domain 1 155 252 - -
Car08g00488 535 ProSitePatterns Protein kinases ATP-binding region signature. 183 205 IPR017441 GO:0005524
Car08g00488 535 MobiDBLite consensus disorder prediction 476 535 - -
Car08g00488 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
Car08g00488 535 Coils Coil 197 217 - -
Car08g00488 535 SUPERFAMILY Protein kinase-like (PK-like) 152 476 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00488 Car-Chr8 4101415 4104990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00488 158 476 Receptor kinase-like Gene Family AT4G02010 41.975 4.01e-80 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Car08g00488 Pkinase 7.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00488 - - gmx:100797726 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00488 08 4101415 4104990 Car08g00488 08 4101415 4104990 ECH