Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00487 ATGGCGGATGAAGATGGTTCAAGCAGGAAGCGAAGAGCAGCCAGAGGACCTGAATCCAATGCCCGCAGCCAAGCATTAGAGCGTCTCAAAGCTCGCCTCTCCGGCGGCCGCCGATCCGACGGTGCCGCACCTCAAATCAGGTTAGAAAACCCTATCTACGACACAATCCCCGAAGAAGAGTACAACGCTCTAGTCGCCAAGCGACGCGATCAAGCGCGCTCATTCATCGTCGACGATGACGGCCTCGGTTACGGCGATGAAGGCGAAGAAGAGGATTGGTCCAAAGCAGGATTCAATCTCTCCTCCGACGAATCTGACGGCGAATCGGAGAAACCTAAAAAGAAAAAAGAACCTTCTCAGAATAAACGTCcttcttcttctgcttcttcgctatcagctgctgctgctATGATGGGACCGCAGAGGCTTTCGTCTATGTTCACTTCCGCGGTTTTCAAGAAAAACAGAGACGATAAGGTCAGCGAACGTATCGTTGATGATGTACTCGCGGAATTTGCACCGGATGAGTCTGATAGACTCAGTCGTAGAAAAGTGCAACCGAATTCGTCTTCTATTAAACCCTCTGCTGAATCTGTACGAGTTGCTTCTTCGCACCAAAAGTTTGCTATTGCAAAAGTTGATGCTGAATCTGTTAGGGTTAATAAAGATAATGAATCTAACTTAGGGTTAGAGAAAAACTGTGAAGTAGAATTGAATGGAAGCTTAGAAAATGGTGATGCAGAAATGGTGGTAGAACCTAATGACTGTCCTTCTCCAAGTAATGGGGATTTAGTTGAGGAGAAAGTGGTGAAAGATGTTGAAATGGAAGCGAAACCGGTAGAGAAAAAGGAGGGTTTTATTTTGAATGCGAAAATCTCAGAAGAGGTGGTGGACCCAAAATTGTGTGCTACTGCTGGTTGGCAGGCAGCGAGGAGTGGTGCTGGTGTTGGAGGGGAGGTGAACGTTGCTGGTCCAAAGGATGCTTTGCTTAATCAACAACATTCTGAGTTCAATTTGGAGCCAGAAGGATCCCTTCCTTTCTACATAATAGATGCTTATGAAGAGTATTATGGAGCTAATATGGGTACTCTTTATTTGTTTGGGAAGGTCAAAACAGGGAATTTGTATCAGAGTTGCTGTATTGTTGTGAAGAACATGCAGAGGTGTGTCTATGCAATTCCATGTCGTCCTTTGCATTCCATTGAAGAGATGATAGAGCTTGAGAAAGATGTCCAAGAGTCTCGAATTTCTCCTGCAGATTTCTGTAAAAAGCTGCAAGATGCCACATCTGATATAAAGAATGAGATAGCTAAACATCTGGTGGATCTGGGCGTTTCTTCCTTTAGCATGGCACCTGTCAAGAGGAAATATGCATTTGAACGACTTGACATTCCTTCAGGTGAAAATTATGTGGTGAAAATAAATTATCCATTCAAGGATCCAGCACTTCCAGTAGACCTCAGAGGAGAAAGTTTCTGTGCTCTTCTTGGAGCTCGAAGCAGTGCACTCGAGCTATTTCTGGTTAAAAGGAAGATTAAGGGGCCTTCATGGCTACAAGTTTCAAACTTTTCTACCTGCTCAGCTTCCCAAAGGGTAAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCCAAAGACATCAGGGTTTCTTCTTCATCTTCCTCAAAAATCACTCGCGAGATTCCTTCTGTGGTTGTCACGGCGATAAACTTGAAAACCACCATAAATGAAAAACAGAACATAAATGAAATTGTATCTGCATCTGTTGTCTGTTGCAATATGGTCAAGATTGACACTCCGATGCTGGCTTCAGAGTGGAAGAAACCTGGAATGCTGACCCATTTTACTGTTATTCGCAAACTTGATGGGAATATATTTCCAATGGGATTCAATAAGGAGGTTACAGACAGAAACATAAAAGCTGGGTCACATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGTTAAATCGTCTAATGTTAGAATTACACAAGCTAGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTCGACCTGGATGTTCTTCTCCACAGATCTCAGGCTTGCAGAGTACCAAGCAGCATGTGGTCTAAACTGGGTCGTCTCAACCGTTCTACGATGCCTAAGCTCGAGAGAAGAAGCAAAACGTTTGGTTTTGGAGCTGATCCTGCTATCATGTCTTGTGTAGCTGGTCGGCTTCTTTGTGATACATATTTGTGTTCCCGTGACTTATTAAAGGAGGTTAGCTATTCTTTAACTCACCTAGCAAAAACACAGCTGAACCAATCTCGGAAGGAAGTTGCGCCACATGATGTTCCAAAAATGTTCCAAGCTGCAAAATCCCTGATGGAGCTAATTGAATATGGTGAAACGGATGCATGGTTGGCTATGGAACTCATGTTTTATTTGAGTGTTCTTCCTCTCACACGCCAGTTGACTAATATAAGTGGCAATCTGTGGGGTAAAACTCTTCAGGGTGCCCGGGCGCAGAGGGTGGAGTATCTTTTGTTGCATGAGTTTCATAAAAAGAAATATATTGTTCCAGACAAGTTTTCTAATTACGCAAAAGAAACAAAATTGACGAAACGAAGAGTAACTCATGGTGTCGATGATGGCAACTTTGATGACACAGATATTAATGATGCAAACTATCATAATGATGCTTCTGAAAGTGATCATAAGAAAAGCAAAAAGGCTGCTTCCTATGCTGGAGGACTGGTTTTAGAGCCAAAGAAGGGTCTATACGACAAATATATATTACTTCTGGACTTCAACAGTCTATACCCTTCCATCATTCAGGAATATAATATTTGCTTCACAACTGTTGAAAGATCTTCAGATGGATCTTTTCCTCGTCTGCCATCTAGTAAAACAATTGGAGTCTTGCCAGAGTTGCTGAAAAAGCTGGTTAAATGGAGGAGAGACGTAAAGACATGGATGAAGACTGCATCTGGTCTTAAACTTCAGCAACTGGACATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGTATGTACGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCGAAGCCACTGGCTGAGCTCATAACCCTACAAGGAAGGGAGATACTGCAAAGCACAGTTGATCTCGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGGTTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATAGCTAAGAAAGTTATTCATGAGGTCAATAAGAAATATAGGTGCTTAGAAATTGATCTCGATGGTGTGTACAAGAGGATGCTACTTCTCAAGAAAAAGAAATATGCAGCTGTAAAGGTGCAGGTTAAAGATGGCACCCCATATGAGGTTATTGAACGCAAAGGTCTTGATATTGTCCGCCGTGACTGGAGCTTATTAGCGAAAGATTTAGGAGACTTTTGCCTGACTCAAATTTTGTCGGGAGGGTCATGTGAAGATGTTATCGAATCAATTCACAACTCTCTGATGAAGGTGCAAGAAGAAATGAGGAACGGACAAGTACCATTGGAAAAATATGTCATCACAAAGACATTAACTAAACCACCCGAAGCATATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACACCTCTGGCTGCTCTGTTGGTGATACAATCCCTTATATAATTTGCTACGAGCAGGGTGGTAGTTCAGGCAGTGCAACGGGAATTGCTCAACGTGCCAGACATCCTGATGAACTAAAACGGGAACAGGAGACATGGCTAATTGACATTGATTACTATTTGTCACAACAGATTCATCCTGTGGTATCACGTCTTTGTGCATCAATTCAGGGCACAAGCCCTGAAAGACTGGCTGATTGTTTAGGGCTTGACACATCAAAGTTTCAACATAAATCAAGTGAAGCTTCAAGTGATGATCCTACAAGCTCACTCTTGTTTGCTGGTGATGATGAGGAGAGGTACCAAGGATGTGAGTCGTTGGTCTTGTCATGCCCCAGCTGCTCTGTTTCATTTGACTGCCCACCTGTGTTTAAATCTATTTGTTTGTTGGGAAATGAAAAGCCAGCCAGCTCAGGTGTGGAGGAATCTGACTACAATTTCTGGCGCAAGCTGTGCTGTCCCAAATGCTTTGAAAATGGTGTTGGCAGAATTTCCCCTGCAATGATAGCCAATCAGGTCAAACGGCAAGCAGAGAAGTTTGTTTTAATGTATTATAGAGGTTCACTAATGTGTGATGATGAAACTTGTAAGCATACAACGCGGAGTGTCAGTTTTCGTTTGGTTGGGGATTCTGAGAGAGGAACTGTATGTCCAAGTTATCCTCGCTGCAACGGGCATCTTAACAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTCTCATATTTTTGCCATGTGTTTGATACTGTTTGTTGTATAGAAAAGATGGAAGCAAAGTCTAGGATACCGATAGAGAAGGAGTTGATCAAACTTAGGCCCGTGGTTGATCCTGCTGCATCAACAATACAGAAAATCAGAGACCGTTGTGCCTTTGGGTGGGTGAAGCTGCAGGACCTGGTTGTTACAATTTAA 4599 0.4229 MADEDGSSRKRRAARGPESNARSQALERLKARLSGGRRSDGAAPQIRLENPIYDTIPEEEYNALVAKRRDQARSFIVDDDGLGYGDEGEEEDWSKAGFNLSSDESDGESEKPKKKKEPSQNKRPSSSASSLSAAAAMMGPQRLSSMFTSAVFKKNRDDKVSERIVDDVLAEFAPDESDRLSRRKVQPNSSSIKPSAESVRVASSHQKFAIAKVDAESVRVNKDNESNLGLEKNCEVELNGSLENGDAEMVVEPNDCPSPSNGDLVEEKVVKDVEMEAKPVEKKEGFILNAKISEEVVDPKLCATAGWQAARSGAGVGGEVNVAGPKDALLNQQHSEFNLEPEGSLPFYIIDAYEEYYGANMGTLYLFGKVKTGNLYQSCCIVVKNMQRCVYAIPCRPLHSIEEMIELEKDVQESRISPADFCKKLQDATSDIKNEIAKHLVDLGVSSFSMAPVKRKYAFERLDIPSGENYVVKINYPFKDPALPVDLRGESFCALLGARSSALELFLVKRKIKGPSWLQVSNFSTCSASQRVSWCKFEVTVDSPKDIRVSSSSSSKITREIPSVVVTAINLKTTINEKQNINEIVSASVVCCNMVKIDTPMLASEWKKPGMLTHFTVIRKLDGNIFPMGFNKEVTDRNIKAGSHVLCVESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRSQACRVPSSMWSKLGRLNRSTMPKLERRSKTFGFGADPAIMSCVAGRLLCDTYLCSRDLLKEVSYSLTHLAKTQLNQSRKEVAPHDVPKMFQAAKSLMELIEYGETDAWLAMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNYAKETKLTKRRVTHGVDDGNFDDTDINDANYHNDASESDHKKSKKAASYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPRLPSSKTIGVLPELLKKLVKWRRDVKTWMKTASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMVYSGLDDIAKATSIAKKVIHEVNKKYRCLEIDLDGVYKRMLLLKKKKYAAVKVQVKDGTPYEVIERKGLDIVRRDWSLLAKDLGDFCLTQILSGGSCEDVIESIHNSLMKVQEEMRNGQVPLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYTSGCSVGDTIPYIICYEQGGSSGSATGIAQRARHPDELKREQETWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDTSKFQHKSSEASSDDPTSSLLFAGDDEERYQGCESLVLSCPSCSVSFDCPPVFKSICLLGNEKPASSGVEESDYNFWRKLCCPKCFENGVGRISPAMIANQVKRQAEKFVLMYYRGSLMCDDETCKHTTRSVSFRLVGDSERGTVCPSYPRCNGHLNRKYTEADLYKQLSYFCHVFDTVCCIEKMEAKSRIPIEKELIKLRPVVDPAASTIQKIRDRCAFGWVKLQDLVVTI 1532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00487 1532 MobiDBLite consensus disorder prediction 1 57 - -
Car08g00487 1532 Pfam DNA Polymerase alpha zinc finger 1325 1528 IPR015088 GO:0003887|GO:0006260
Car08g00487 1532 ProSitePatterns DNA polymerase family B signature. 1052 1060 IPR017964 GO:0000166|GO:0003676
Car08g00487 1532 TIGRFAM pol2: DNA polymerase (pol2) 52 1282 - -
Car08g00487 1532 Gene3D DNA Polymerase alpha, zinc finger 1324 1518 IPR038256 -
Car08g00487 1532 PRINTS DNA-directed DNA-polymerase family B signature 921 934 IPR006172 GO:0000166|GO:0003676|GO:0003887
Car08g00487 1532 PRINTS DNA-directed DNA-polymerase family B signature 997 1009 IPR006172 GO:0000166|GO:0003676|GO:0003887
Car08g00487 1532 PRINTS DNA-directed DNA-polymerase family B signature 1050 1058 IPR006172 GO:0000166|GO:0003676|GO:0003887
Car08g00487 1532 Gene3D Palm domain of DNA polymerase 890 1115 IPR023211 -
Car08g00487 1532 MobiDBLite consensus disorder prediction 104 121 - -
Car08g00487 1532 Pfam DNA polymerase family B 821 1284 IPR006134 GO:0000166|GO:0003677
Car08g00487 1532 MobiDBLite consensus disorder prediction 184 198 - -
Car08g00487 1532 SUPERFAMILY DNA/RNA polymerases 846 1299 IPR043502 -
Car08g00487 1532 MobiDBLite consensus disorder prediction 1 17 - -
Car08g00487 1532 Gene3D Helix hairpin bin 960 1011 - -
Car08g00487 1532 CDD DNA_polB_alpha_exo 562 813 - -
Car08g00487 1532 Gene3D - 387 513 - -
Car08g00487 1532 MobiDBLite consensus disorder prediction 78 137 - -
Car08g00487 1532 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Car08g00487 1532 Gene3D - 1128 1315 IPR042087 -
Car08g00487 1532 Pfam DNA polymerase family B, exonuclease domain 377 755 IPR006133 -
Car08g00487 1532 SUPERFAMILY Ribonuclease H-like 342 850 IPR012337 -
Car08g00487 1532 Gene3D - 347 546 - -
Car08g00487 1532 MobiDBLite consensus disorder prediction 173 198 - -
Car08g00487 1532 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 16 1531 - -
Car08g00487 1532 Gene3D - 562 874 IPR036397 GO:0003676
Car08g00487 1532 SMART polmehr3 562 1064 IPR006172 GO:0000166|GO:0003676|GO:0003887
Car08g00487 1532 CDD POLBc_alpha 896 1300 IPR045846 GO:0003887|GO:1902975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00487 Car-Chr8 4088491 4099681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00487 1 1530 Core DNA Replication Machinery Family AT5G67100 60.489 0.0 1842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00487 K02320 - gmx:100798779 2241.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00487 08 4088491 4099681 Car08g00487 08 4088491 4099681 ECH