Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00485 atgggagaCaatgataataacaataataataacaataTCTCTTCCTCTCAAGACGAAATCTCCctttttctccatcaaattctcctccgttcatcatcttcctcttcttcttctCAACCACACAACTCCATGCCTCTCCAAGATGGGAACATCTCACCCCTTCATTTCAATCTCTCTTCATCTTCTCTTGGTGGAAACGACACTGATGACTATGACTGTGAAAGCGAGGAGGGTGTTGAAGCATTGACTGAAGAACTTCCAACAAAGCATGTTGCTTCTAGAAGTTCTTCTAAAAGAAGCAGAGCAGCAGAAGTTCATAATTTGTCTGAAAAGAGAAGAAGGAGTAGGATCAATGAGAAAATGAAGGCTTTACAGAATCTAATTCCAAATTCCAACAAGACTGATAAGGCTTCAATGTTAGATGAAGCTATTGAATACCTTAAACAGCTTCAACTCCAAGTACAGATGCTTTCATTGAGAAATGGATTGAATTTGCATCCGATGTGCTATCCCGAAGGCTTGCAGCCTCTGACGTTGTCTCAGATGAGTATGGAGTTGTGTGACGGGAACAGGTCTACCCCTTTAAACATGACATCTACTCTGCCTCTTCCCCAAGAGAATCCTTTGCTTTATGGATCCAATCTACCTAACAAAACCACATTGCCAAGTCAGCCATCAATGTCCTACCCTTCATATATTAACAACACAGAAACTTCTTTCGGGGTCGAGTCCCGAATCCCAACACAAAAAAGACCTCTCAAACGATCTTCAGTGCCAATACACGGTGAAGACATGCTGCAGTACCAGCAATCGAATGCAATCCATTCTGCTACCAATCTAATAGGTGGTTCTCAAGTTGTCAAAGAATTCGAATCAGGCTCGACCACAGCTAACAATTCTTTGCAAACATGTATTGCCGTGCGAGATCAGTCAGAAGCGATCATGAGAAATAGTGAGCCCAACATTATACTTACATCACAGTTAAGTAGATAA 993 0.3847 MGDNDNNNNNNNISSSQDEISLFLHQILLRSSSSSSSSQPHNSMPLQDGNISPLHFNLSSSSLGGNDTDDYDCESEEGVEALTEELPTKHVASRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLNLHPMCYPEGLQPLTLSQMSMELCDGNRSTPLNMTSTLPLPQENPLLYGSNLPNKTTLPSQPSMSYPSYINNTETSFGVESRIPTQKRPLKRSSVPIHGEDMLQYQQSNAIHSATNLIGGSQVVKEFESGSTTANNSLQTCIAVRDQSEAIMRNSEPNIILTSQLSR 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00485 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 150 IPR011598 GO:0046983
Car08g00485 330 PANTHER TRANSCRIPTION FACTOR SPATULA 12 278 - -
Car08g00485 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 160 IPR036638 GO:0046983
Car08g00485 330 CDD bHLH_AtPIF_like 104 163 - -
Car08g00485 330 Gene3D - 96 159 IPR036638 GO:0046983
Car08g00485 330 MobiDBLite consensus disorder prediction 33 68 - -
Car08g00485 330 Coils Coil 140 160 - -
Car08g00485 330 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 278 IPR031066 -
Car08g00485 330 MobiDBLite consensus disorder prediction 33 113 - -
Car08g00485 330 Pfam Helix-loop-helix DNA-binding domain 105 151 IPR011598 GO:0046983
Car08g00485 330 MobiDBLite consensus disorder prediction 97 113 - -
Car08g00485 330 SMART finulus 107 156 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00485 Car-Chr8 4075988 4079682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00485 66 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.000 1.28e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car08g00485 HLH 3.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00485 - - var:108334706 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00485 08 4075988 4079682 Car08g00485 08 4075988 4079682 ECH