Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00479 ATGTGGGATCTGAATGATTCACCCGATCAAAGAAAAGATTACGAATCAGAAGGTTGTTCATCTATTAAAACATCAAACGACGGTGATGAAGTTGATGATCATCATCATAAAGGAAAAAGAGTTGGATCTGTTTCAAATTCAAGTTCCTCTGCTATTGTAATAGAAGATGGATCCGAAGAAGAAGAAGGTGAAAACGGAACGTTGAAGAAAAGAACTAGTAAGGTATTTGGGTTTTCAATGGATAGTAGTAGTAGTGAGTGTCCACCGGTGACACGTCAGTTTTTTCCGGTGGAGGATTCCGATATGGTGGTGACATCTTCCGTTTGTGGCGGTGGTGGTGGTAGTTCTTCGTTTCCACGAGCTCATTGGGTTGGTGTGAAATTTTGTCAATCGGAAAGTGTTGGAGGTGGAAAATCAGTGGAAGGTTCTCAACCGATAAAGAAGAGTCGTAGAGGACCAAGGTCAAGAAGCTCACAGTATAGAGGTGTTACTTTTTACAGAAGAACAGGTCGATGGGAATCACATATATGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACGGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCAATTAAGTTCCGAGGAGTAGAGGCAGACATCAACTTCAATATTGAAGATTATGAAGAGGATTTGAAGCAGATGAGTAATTTAACGAAGGAAGAGTTTGTGCACGTACTTCGGCGACAAAGCACAGGATTTCCCAGAGGTAGTTCTAAATATAGAGGTGTAACTTTGCACAAATGTGGAAGATGGGAAGCTCGTATGGGTCAATTCTTAGGCAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTTACTAATTTTGATCCCAGCATCTACGATAATGAGCTTAATACTGAATCTCCAAGTAACGCTGCGGATCACAATTTGGATTTGAGTTTGGGAAATTCAAGCTCTAAATGTAGCAATAGTCTTCAAGCATTTGGGAATTACAATACAAATGCAATTACCACTGATCAGCATATGGCACCTGAATCAAATTGGCGGAATGGTGGAATCAAGCCTAAGGCTGTGAATATACTACCAAAACCATGTAATGTAAGGGATGGGTATGGGGAGAGTGAAGCCTTACGGATGCTAAGCCAAACTCACCTTCAATCTCCAACTGCAGCTACTAATACTGAAATGCATAGATATGGTACCTTATACAGGTCACCTGTTGAACAACATCATCAAATGCTTCACACTTTTCCACATCTTCATCCGTCAAATTTTCATGTTTCcagcagcagcagcagcaATGGAGGCCGTATAGGAAGTGATCTATCATTATCATCAATGTCCGATCAACAAAAGTGGCAAACGGGTCCTCCACCACATTTGTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCACCTCAGATTATAAGACCCTCTTCTCAACCTTGGCTGCACAAAAATTCTACTACTACTATTGGCTTCCACACTCTCATGAGACCCTCTTGA 1566 0.4112 MWDLNDSPDQRKDYESEGCSSIKTSNDGDEVDDHHHKGKRVGSVSNSSSSAIVIEDGSEEEEGENGTLKKRTSKVFGFSMDSSSSECPPVTRQFFPVEDSDMVVTSSVCGGGGGSSSFPRAHWVGVKFCQSESVGGGKSVEGSQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNTESPSNAADHNLDLSLGNSSSKCSNSLQAFGNYNTNAITTDQHMAPESNWRNGGIKPKAVNILPKPCNVRDGYGESEALRMLSQTHLQSPTAATNTEMHRYGTLYRSPVEQHHQMLHTFPHLHPSNFHVSSSSSSNGGRIGSDLSLSSMSDQQKWQTGPPPHLLATAAAASSGFPPQIIRPSSQPWLHKNSTTTIGFHTLMRPS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00479 521 MobiDBLite consensus disorder prediction 444 476 - -
Car08g00479 521 CDD AP2 250 310 IPR001471 GO:0003700|GO:0006355
Car08g00479 521 SMART rav1_2 251 314 IPR001471 GO:0003700|GO:0006355
Car08g00479 521 SMART rav1_2 159 221 IPR001471 GO:0003700|GO:0006355
Car08g00479 521 MobiDBLite consensus disorder prediction 132 160 - -
Car08g00479 521 ProSiteProfiles AP2/ERF domain profile. 251 308 IPR001471 GO:0003700|GO:0006355
Car08g00479 521 SUPERFAMILY DNA-binding domain 158 216 IPR016177 GO:0003677
Car08g00479 521 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 519 - -
Car08g00479 521 PRINTS Ethylene responsive element binding protein signature 252 263 IPR001471 GO:0003700|GO:0006355
Car08g00479 521 PRINTS Ethylene responsive element binding protein signature 290 310 IPR001471 GO:0003700|GO:0006355
Car08g00479 521 SUPERFAMILY DNA-binding domain 250 310 IPR016177 GO:0003677
Car08g00479 521 Pfam AP2 domain 250 299 IPR001471 GO:0003700|GO:0006355
Car08g00479 521 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Car08g00479 521 MobiDBLite consensus disorder prediction 1 18 - -
Car08g00479 521 CDD AP2 159 216 IPR001471 GO:0003700|GO:0006355
Car08g00479 521 MobiDBLite consensus disorder prediction 1 68 - -
Car08g00479 521 ProSiteProfiles AP2/ERF domain profile. 159 215 IPR001471 GO:0003700|GO:0006355
Car08g00479 521 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 519 - -
Car08g00479 521 Gene3D AP2/ERF domain 250 309 IPR036955 GO:0003700|GO:0006355
Car08g00479 521 Gene3D AP2/ERF domain 158 217 IPR036955 GO:0003700|GO:0006355
Car08g00479 521 MobiDBLite consensus disorder prediction 444 480 - -
Car08g00479 521 MobiDBLite consensus disorder prediction 26 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00479 Car-Chr8 4016090 4020110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00479 1 338 AP2-EREBP Transcription Factor Family AT4G36920 68.555 1.17e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Car08g00479 AP2 3.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00479 K09284 - gmx:100786333 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00479 08 4016090 4020110 Car08g00479 08 4016090 4020110 ECH
Car08g00479 08 4016090 4020110 Car07g01426 07 13499828 13503311 PCT