Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00477 atggaaggtgaaagtggaaaaggagagagaaagagaagtgtcgttgaaggagagagaagatacaaaggaataaggatgagaaagTGGGGAAAATGGGTTGCGGAAATTAGAGAACCGAATAAACGTTCAAGAATTTGGCTTGGTTCCTATTCTACCCCTATAGCCGCCGCTAGAGCTTATGACACCGCCGTTTTCTATCTCCGGGGACCATCTGCTCGTCTTAACTTCCCGGAGCTACTCGCCGGAGAAAACAACAACGTTCTTGCTGCTTCTGATATGTCGGCTGCTTCAATTAGAAAGAAAGCTACTGAAGTTGGTGCTAGGGTTGATGCTCTTCAAGCTACtcatcatcatcataatcataaccataaccataaccaCCGTGTTATGCCGGCGCCGGAGTTACTTGCCGGTGGTGGTGGCTCTGGTGATTTTGTGGAGAGGGTTGACTTGAACAAGATTCCTGAACCGGAAAATTCGGATTGTGAGTGGGATGTTAATTGA 504 0.371 MEGESGKGERKRSVVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPELLAGENNNVLAASDMSAASIRKKATEVGARVDALQATHHHHNHNHNHNHRVMPAPELLAGGGGSGDFVERVDLNKIPEPENSDCEWDVN 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00477 167 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Car08g00477 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 4 161 - -
Car08g00477 167 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Car08g00477 167 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Car08g00477 167 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Car08g00477 167 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Car08g00477 167 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Car08g00477 167 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Car08g00477 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 4 161 - -
Car08g00477 167 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g00477 Car-Chr8 3994369 3995462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g00477 8 165 AP2-EREBP Transcription Factor Family AT5G67190 57.459 2.31e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car08g00477 AP2 4.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00477 K09286 - gmx:100783682 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00477 08 3994369 3995462 Car08g00477 08 3994369 3995462 ECH